| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0705 |
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| Symbol | |
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| ID | 3963947 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 745043 |
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| End bp | 747817 |
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| Gene Length | 2775 bp |
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| Protein Length | 924 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637915536 |
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| Product | tetratricopeptide TPR_2 |
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| Protein accession | YP_521987 |
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| Protein GI | 89899516 |
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| COG category | [G] Carbohydrate transport and metabolism
[N] Cell motility
[R] General function prediction only
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2956] Predicted N-acetylglucosaminyl transferase
[COG3063] Tfp pilus assembly protein PilF
[COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | [TIGR02917] putative PEP-CTERM system TPR-repeat lipoprotein |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGTCA AGAAAATACA GCCTCGGATC GCGTTGTCGG CGCTGCTGGT GTCGATGTTG
CTGGCAGCTT GCAACGACAA GCCGGAGGCC ATGCTCAGCT CGGCCAAAGA CTACATGGCC
AAGAATGACA ACAAGGCGGC GGTCATTCAG ATCAAGAATG CGCTGCAGAG CAACCCCGAC
TTGCCTGAGG CGCGCTACTT GTTGGGTAGC GCACTGCTCG ACACGGGAGA CCCGGCTGGC
GCCGAACTGG AACTGCGCAA AGCGCTCGAC CTGAAGCATC CGCAAGATGC GGTGGTGCCG
CAACTGGCCA AGGCTCTGCT GGCGCAAGGG AAGGCTCGCA AAGTGACTGA GGAGTTCGCC
AAGACAGAGC TCGGCGCAGC GTCGGCCAAG GCCAGTCTAC AGATTTCGCT CACTTCGGCC
TATGCGATGC AGGGAGAGCG CGAGCAGGCC CAGGCGAGCC TGCAGGCCGC CCTGCTGGCG
GACCCGGGTT TTGCGCCGGC TTTGCTGGTG CAAGCCCGGC AAAAGGCGGG GCAGCGCGAG
TTTGACCAGG CGCTTGCCTT AACCGAGGAG GTGCTTGCCA AGTCGCCTCG CAGCACGGAG
GCCTGGGTAT TCAAAGGCGA CTTGCTGCTG CATGTCAAAA ATCAGCCTGA CGAGGCCTTG
GCCGCTTACC GCAAAGCGCT TGAGATCAAA CCCGATTTCA TGCCCGCTCA GGTGTCTGTG
ATCACGCTGT TGCTGCAGCA AGGCAAGCTT GTCGAGACCC AACAACAAAT TGAACACTTG
AAAAAAACAG CGGCCCGGCA TCCGCAAACC CAATTTCTGG AAGCGCAGTG GGCCTATCAA
AAGAAAGATT TCAAATTGGC CCGGCAACTC CTGCAGCAGG TTTTACAGCT GGTTCCCAAG
AGTGCTCAGG GCTTGCAGCT GGCGGGCCTG GTCGAACTGC AACTCAATGC CTTGCCGGCG
GCGCAGGACT ATTTGAGTCG GGCGGTGCAG GGCGCTCCCG AGTCATGGCT GGCGCGCCGG
GCGCTGGTCA TCAGCTATAT GCGCGCCGGG CAAGCGGCCC AGGCCCTGAA CGCCTTGTTG
CCAGGTCTGA GCCAGGAACA CGTTGATCCC AATTTGCTTT CCGTGGCGGG CGAGGTCTAT
CTGCTCAATG GGGACCTGAA AAAGGCGGAA GACTATTTTG CCAAGGCGGC CCAGCAGTCG
CCCCAGGACG GCAGAAAACG GACGTCGCTG GCGCTCACCC GTTTGGTGAG CGGCGCGACA
GACGGTGCTT TTGATGAGTT GCAGACCATC GCCGCGTCAG ACACCGGTAC CAGCGCCGAC
CTGGCCCTGA TCAGCGTGCA CTTGAAACGA CAGGAATTTG ACCAGGCCTT GAAAGCGATC
GACGGGCTGG AGAAAAAGCA GCCGGACAAG CCGTTTGCGG CGCAGCTGCG GGCCAGAACA
CTGTTGGCCA AAAATGATGT GAGCGGTGCA AGAAAGAGTT TTGAGCGTGC TTTGGTGATT
GACCCCCACT ATTTTCCGGC CGTGGTCAGT CTGGCCGCGA TCGATTTGGC TGACAAGAAG
CCTGAGGCGG CAAAAAAGCG CTTTGAGGCG GTGCTGGACA AGGACCCCAA AAACGGCCAG
GCCTGGTTGG CGCTGGCCGA ACTCGCGTCC CGGGCGGGGG CCTCCAAAGA TGAAGTCGCC
AAGCTGATTG GCAGTGCGGT GGCCGCTAAC CCCACGGACG TGAAGTCACG TTTGTTGCTG
ATCGATTTTG ATCTGCGCCA GCGCGATTTC AAGGCGGCTG TTTCGGCGGC CCAGGACGGC
GTGGCCACCG TGCCAGACAG CCCTGAGCTG CTCGATGCAC TCGGTCGCAC ACAACAGGCT
GCAGGCGAGC CCAACCAGGC CATTGCCAGC TACACCAAGC TGGCTGCCCT GCAGCCGCTG
TCGGTGCTGC CTCATATGCG CCTGGCGGAG GTGCACCTGG CGGGTAAAAA CACAGAGGCG
GCGCTTGCCA GCCTGCGCCG GGCCCTCGAG ATCAAGCCCG ATCTGCTGGA GGCGCAGCGG
GCCTTGATTG CGCTGGCGCT GGACAGCAAG AAGCCTGAGG ATGCACTGAC CATGGCGCGC
TCGGTGCAGC AGCAACGCCC CGAAGAGGCG GCGGGCTACG CCCTGGAGGG GGACATCCAT
GCCTCGCAGA AGAGTTGGGA CCGCGCCATC ACGGTCTATC GTGGCGGGCT CAAACACGTC
AAGGCGCCGG AGCTGGCGAT CAAGCTGCAC GCGGCTCTGG TGGCGGCGGG TCAAGGTGCG
GAGGCTGACA AATTTTCCAG CAGTTGGCAG AAAGAGCAGC CGAAAGATGG CGCCTTTTTG
CTTCATCTGG GTGATGCGGC GCTGGCACGC AAGGACTATG CAAGCGCCGA GAAGAATTAT
GCGGCAGTGG TCAAGCTGCA GCCCAATAGC GCACTGGCCT ACAACAACCT GGCCTGGGTG
AGCGGAAAAC TCAACAAGGA GGGCGCCGTG GGCTTTGCCG AGAAGGCCAA TGCCCTGGCA
CCCAACCAGC CCGCTTTCAT GGACACGCTG GCGGTCTTGC TGTCAGACAA AGGTGAGTAC
GCCAAAGCGG TCGCGCTTCA GAACAAGGCC CTGGCGCTGC AGCCGCAGAA CGCCTTGTTC
AAACTCAATC TGGCGAAAAT TCATATCAAA GGCGGAAAAA AAGATCTGGC CAGGAAAGAA
CTCGATGGCT TGACTCAACT GGGCGACAAG TTCCCGGCGC AGAGTGAGGT TGCAACCCTC
CTGACAGGTT TGTAG
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| Protein sequence | MNVKKIQPRI ALSALLVSML LAACNDKPEA MLSSAKDYMA KNDNKAAVIQ IKNALQSNPD
LPEARYLLGS ALLDTGDPAG AELELRKALD LKHPQDAVVP QLAKALLAQG KARKVTEEFA
KTELGAASAK ASLQISLTSA YAMQGEREQA QASLQAALLA DPGFAPALLV QARQKAGQRE
FDQALALTEE VLAKSPRSTE AWVFKGDLLL HVKNQPDEAL AAYRKALEIK PDFMPAQVSV
ITLLLQQGKL VETQQQIEHL KKTAARHPQT QFLEAQWAYQ KKDFKLARQL LQQVLQLVPK
SAQGLQLAGL VELQLNALPA AQDYLSRAVQ GAPESWLARR ALVISYMRAG QAAQALNALL
PGLSQEHVDP NLLSVAGEVY LLNGDLKKAE DYFAKAAQQS PQDGRKRTSL ALTRLVSGAT
DGAFDELQTI AASDTGTSAD LALISVHLKR QEFDQALKAI DGLEKKQPDK PFAAQLRART
LLAKNDVSGA RKSFERALVI DPHYFPAVVS LAAIDLADKK PEAAKKRFEA VLDKDPKNGQ
AWLALAELAS RAGASKDEVA KLIGSAVAAN PTDVKSRLLL IDFDLRQRDF KAAVSAAQDG
VATVPDSPEL LDALGRTQQA AGEPNQAIAS YTKLAALQPL SVLPHMRLAE VHLAGKNTEA
ALASLRRALE IKPDLLEAQR ALIALALDSK KPEDALTMAR SVQQQRPEEA AGYALEGDIH
ASQKSWDRAI TVYRGGLKHV KAPELAIKLH AALVAAGQGA EADKFSSSWQ KEQPKDGAFL
LHLGDAALAR KDYASAEKNY AAVVKLQPNS ALAYNNLAWV SGKLNKEGAV GFAEKANALA
PNQPAFMDTL AVLLSDKGEY AKAVALQNKA LALQPQNALF KLNLAKIHIK GGKKDLARKE
LDGLTQLGDK FPAQSEVATL LTGL
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