Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_0619 |
Symbol | |
ID | 3963937 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | + |
Start bp | 641683 |
End bp | 643986 |
Gene Length | 2304 bp |
Protein Length | 767 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637915449 |
Product | TonB-dependent receptor |
Protein accession | YP_521901 |
Protein GI | 89899430 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCTCAAT TCAGACTTTG CCAACTCACT TGCGCCGTGG CCCTGGCGCT GCCTACACTG GCCCTGCTGA GCGGCCCGGC GCTGGCGGCA GACCTTGCCG CATTCACGCT GGCCCCGATC ACTGTCACCG GTAGCCCAAG CCATATCAGC CAGCCACTGG GCGCCACAGC CGTTGACCCG GCCAGCCTGG CGCCCAAACT GTCCGCCACC AGCGACACGG CCAGCCTTTT GCAGGACGTA CCGGGCTTAA GCCTGTACGG CGCCGGTGGC GTGTCCAGCC TGCCAGCGAT CCACGGCTTG GCTGATGACC GTTTGCGCAT CAAGGTGGAT GGCATGGACC TGATTGCTTC CTGCCCCAAT CACATGAATC CGGCGCTGTC TTACATCGAC CCGACCCAGG TGGGCCTGCT CAAGGTCTAT GCAGGCATCA CGCCAGTGAG CGCGGGTGGT GATTCCATTG GCGGCACCAT TGTTGCGCAG ACGCGTGCAC CCGAATTTGC CGCACCGGGG CAAGCCGCCA TCACCAAGGG CGAAGTGGGC ACCTTTTACC GCAGCAATAA CAAGGCAAGA GGCGCCAACG TTTCGGCCAC CTACGCCACG GAGCAATTCA ACATCAGCTA CAGCGGGGCC ACCAGCCGGG CCGACAACTA CACCGCAGGC GGCGACTTCA AAAACCATGA CTTCACCGGC CGCGTCGGGC ACACCCTGGG GCGTGATGAA GTGGGCTCCA CGGCGTATGA CACACGCAAC CACAGCGTGG GGCTGGCTTT CAAGAGCGAC AACCATCTGT TGGAAGCCAA GCTAGGCTAC CAGGACATGC CGTTTCAGCT CTACCCGAAT CAGCGCATGG ACATGCTGGG CAACACCCAG AACAGTGTGA ACCTGCGCTA CGCGGGCCAG TTCGACTGGG GCGCACTGGA GGCGCGTGCC TACCGCGAGA ACGTGGATCA CGTCATGGAT TTTGGCGCTG ACAAACGCTA CTGGTATGGC GCGGCATCGG GTGGGGGCGC AGCGCTCGAC GGCACACCCT GCAGCCCGAT CAGCGCCACC TGCGCGGCCG GCATGCCGAT GGTCACCGAA GGAAAAACCA CAGGCTTGAG CGTCAAAGCC GACGTGGCGC TGACCCCGCA GGATGTGCTG CGCGTGGGCG CAGAAGCGCA GCAATACCGG CTCAAGGACT GGTGGCCACC GTCAGGTGGG GGCATGTTTC CGGGCACCTT CTGGAACATC CAGGATGGCC AGCGCGATCG CACGGCCGTC TTTGGTGAAT GGGAAGCGCG CAAGAACACG CAGTGGATGA CCCTGCTGGG CGCACGAGTT GAACAGGTCA AAATGAACGC CGGCAATGTG GTGGGCTACA ACCCTGCAGG CGGTGGTTTT CAAGGTCGTG ACGCCAGCGC CTTCAATGCC CAGGATCGGA GCAAAACCGA CAACAACCTG GATCTGACCG CACTGGCCCG CTACAGCGCC AATACCAACT ACGACATCGA GTTCGGCTTC GCCCACAAGG TGCGCTCACC CAATGTGTAT GAGCGCTACA CCTGGTCCAC CTGGCAGATG GCCGCGCTGA TGAATAATTT TGTTGGTGAT GGCAACGGCT ACCTGGGCGA TGTCAACCTG AAGCCAGAGA AAGCCAACAC CATTTCCGCC ACCTTCGACT GGCACGCTGC TGACAGCCGT TGGGGCTTCA AGGCCACGCC TTACTACACC CAGGTGAGCG ATTACATCGA CGCCGTGCAG TGGAATGCCA GCACCAACTT GGCCGCCACA ACGCTGGCAG CCAACAAGTT CAGCGTCCTC AAATACGCCA ACCAGTCGGC CCGCCTCTAC GGCATTGACC TCTCCGGCCA CATGCCGCTG GCCAAGCGTG CTTGGGGTGA CTTTGGGCTC AAAGGCTTGC TGAACTACAC CCATGGCACC AACCAGGATA CGGGCGATGG CCTGTACAAC GTCATGCCGC TCAACGCCAA ACTCGCGTTG ACGCAAAAGT TGAAAGCTTG GGACAACAGC TTTGAACTGT TGATGGTGCA GGCCAAGGAC AGCGTCTCAG GTATGCGCAA TGAAATCAAG ACACCGGGCT ACGGCCTGGT CAATTTGCGC GGCAGCTATT CGTGGAGACA GGTGCGCGTC GACTTCGGTG TTGAGAATCT CTTCGACAGG TTCTATTACC TGCCCAACGG CGGTGCCTAT ACCGGGCAAG GGACAACCAT GAGCAACCCG GCGCTGCCCA ATTACCCGCA ATGGGGTAGC GCCGTGCCGG GTATCGGACG CTCAATTTAC ATGGGTGTGA ATGTGAAGTT TTGA
|
Protein sequence | MSQFRLCQLT CAVALALPTL ALLSGPALAA DLAAFTLAPI TVTGSPSHIS QPLGATAVDP ASLAPKLSAT SDTASLLQDV PGLSLYGAGG VSSLPAIHGL ADDRLRIKVD GMDLIASCPN HMNPALSYID PTQVGLLKVY AGITPVSAGG DSIGGTIVAQ TRAPEFAAPG QAAITKGEVG TFYRSNNKAR GANVSATYAT EQFNISYSGA TSRADNYTAG GDFKNHDFTG RVGHTLGRDE VGSTAYDTRN HSVGLAFKSD NHLLEAKLGY QDMPFQLYPN QRMDMLGNTQ NSVNLRYAGQ FDWGALEARA YRENVDHVMD FGADKRYWYG AASGGGAALD GTPCSPISAT CAAGMPMVTE GKTTGLSVKA DVALTPQDVL RVGAEAQQYR LKDWWPPSGG GMFPGTFWNI QDGQRDRTAV FGEWEARKNT QWMTLLGARV EQVKMNAGNV VGYNPAGGGF QGRDASAFNA QDRSKTDNNL DLTALARYSA NTNYDIEFGF AHKVRSPNVY ERYTWSTWQM AALMNNFVGD GNGYLGDVNL KPEKANTISA TFDWHAADSR WGFKATPYYT QVSDYIDAVQ WNASTNLAAT TLAANKFSVL KYANQSARLY GIDLSGHMPL AKRAWGDFGL KGLLNYTHGT NQDTGDGLYN VMPLNAKLAL TQKLKAWDNS FELLMVQAKD SVSGMRNEIK TPGYGLVNLR GSYSWRQVRV DFGVENLFDR FYYLPNGGAY TGQGTTMSNP ALPNYPQWGS AVPGIGRSIY MGVNVKF
|
| |