Gene Rfer_0562 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_0562 
Symbol 
ID3960750 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp584449 
End bp585171 
Gene Length723 bp 
Protein Length240 aa 
Translation table11 
GC content54% 
IMG OID637915392 
Productflagellar biosynthetic protein FliR 
Protein accessionYP_521844 
Protein GI89899373 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[N] Cell motility 
COG ID[COG1684] Flagellar biosynthesis pathway, component FliR 
TIGRFAM ID[TIGR01400] flagellar biosynthetic protein FliR 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.949104 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCTGGC CATTTTTGCG GGTGTTGGCC GTATTTACCG CCGCCCCCCT CTTTTCTTCG 
AAGGCATTTC CGCTACGCGC CAGGATTGGG CTGGCCTTCT TCATTGCCTT TGCCGCGCAG
CCCAGTCTGC AAGGTCAACC GATCATCAGT ATTTCCGGGC CTGAGGCCAT GGGCGCGGTT
GCACAGCAGG TGGGAATCGG CCTGGCGATA GGGTTCACGG TGCGGCTGGT CTTTGCGGCG
GTGGAACTGG CGGGCGAGGT GGTGGGTTTT CAGATGGGGC TGGGCTTTGC CTCGTTTTTC
AATCCAGCCC TGAATACCCA GTCCAGCGCC GTCGCGCGTT TTTTTGGACA AATGGCCACT
TTTTTGTTCG TCGTGATGAA TGGTCATTTG ATGGTCTTGA TGGCCGTGAT CAAAAGTTTT
GATAAATTTC CAGTGAACCA GAATTTTCTT GAAGCCATCG GGCAAATGAA GATTTATGAT
TTTGGGACGG ACTTGTTCGC CAGCGGGCTG TGGATTGCCT TGCCGATGGT TGGCATGTTG
CTGTTTGCCA ACCTGGCACT GGGCATCGTC TCCAGGGTGG CGCCACAAAT GAATATTTTT
GCCATCGGTT TCCCCGTCAC ATTGACTGTC GGCATGGTGG GTATTGCCGC GACCTTGCCC
ATGCTGGATC AACCTTTTAT GACGCTCATG GAGCGGGCGA TTGACATCTT TGCCGGCAAA
TGA
 
Protein sequence
MIWPFLRVLA VFTAAPLFSS KAFPLRARIG LAFFIAFAAQ PSLQGQPIIS ISGPEAMGAV 
AQQVGIGLAI GFTVRLVFAA VELAGEVVGF QMGLGFASFF NPALNTQSSA VARFFGQMAT
FLFVVMNGHL MVLMAVIKSF DKFPVNQNFL EAIGQMKIYD FGTDLFASGL WIALPMVGML
LFANLALGIV SRVAPQMNIF AIGFPVTLTV GMVGIAATLP MLDQPFMTLM ERAIDIFAGK