| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0542 |
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| Symbol | |
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| ID | 3963881 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 564284 |
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| End bp | 566392 |
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| Gene Length | 2109 bp |
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| Protein Length | 702 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637915372 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_521824 |
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| Protein GI | 89899353 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACTTC GCGCCCCCAT TAAACCTAAA AATGCTATCT ATTCAATAGC TGTTTGCGCA
ATATTGACGG GGGTTACAGC CCTATTTCCT ATAAACCTAC TGGCACAGGC CAGCGCCGTG
TCGAAGCCGG GCGAAGCCGT TACCCTGAAC TTCAGCAACG CCGATATCGA GGCCGTTGCG
CGCACCATGG CGACCATCAC GGGCACCAAT GTGGTGGTGG ATCCGCGCGT CAAGGGCACC
TTGACACTGG TCACTGACAA GCCGGTCAGC CGCCGCGCCG CCATGAACCA GTTCCAGGCG
GCACTGCGCT TGCAGGGCTT CACCATGGTG GAGTCGGCCG GCCTGTACAA GGTCGTGCCC
GAGGCCGATG CCAAGCTGCA AAGTGGCGCA GTGACGGTCA GCGACGAGGC GATCGGTGGT
GCGCTGGGCA ACCAGATCAC GACGCAGATC TTCAAGCTCA ACTTCGAGTC GGCCAACAAC
CTGGTGGCGG TGTTGCGCCC GCTGATCAGC CCGAACAACA CCATCAACGT CAACCCTGGC
ACCAATTCGC TCGTCATCAC CGACTACGCC GACAACCTGC GCCGCATGGC GCGCATCATT
GCCGCTGTCG ACGTGTCCAA TGCCACCGAC GTCGAGATTT TGCCGCTCAA GCACGCCATT
GCGACTGACC TGGCACCGCT GGTGCTGCGG CTGGTGGAGT CCTCGGCGGC CGGCACGGCG
CCGGGCCAGG CGGATACCTC TTTCAAGACC ATTCTGGTGG CCGAGCCGCG CTCCAACGCG
CTGATCTTGC GCGCCGCCAA CCCGGCCCGC GTGGCGCTGG TGAAGTCGCT GGTGGACAAG
CTTGACCAGC CGGCAGCGCC TGGTCTCAAT GGCGAGGCGG GCAATATTCA TGTGGTCTAC
CTCAAGAATG CCGACGCCAC CAAACTGGCC GCCACCTTGC GCGCGGCCAT GACGGGGCAG
GCCCCGGCGG CGGCGGCGCC CGGCGTGGCG GCTGCGGCGA CGGTGGCGGT TGTGGCGGCC
ACCCAGTCCA CCACCGGCGG ACAAATCCAG GCCGATGTGG CGACCAATTC GCTCATCATC
ACGGCGCCCG AGCCGCAGTA CCGGCAGTTG CGTGCGGTCA TTGACCGGCT CGATGGACGA
CGTGCCCAGG TGCTGGTGGA GAGCCTGATT GTGGAGGTGA ACGCCGACCG GGCGGCCGAA
TTTGGCATTC AGTGGCAGGG CCCGTTGGGC AAGGCCGGCG ACGGCGTCAT TGGCCTGCTG
GGCACCAACT TTGGCGCTGC CGGCAAGAAC ATCATCAACC TGGCAACCGG TGCCGGCGCC
GTGGCGCCGG GGGCAGGCCT CAATTTTGGC GCTGTTCAGC GCACCAACGG GGTCTACGTG
CTCGGCTTCC TGGCGAATTT TCTGGAGACC AGCGGCAGCG GCAATGTGCT GTCCACGCCC
AATTTGCTGA CACTGGACAA CGAGGAGGCC AAGATCGTGA TCGGTGAAAA CGTGCCCTTT
GTCACCGGCT CCTACACCAG CAACAATACC AGTGGCGCTT CGGTCAACCC GTTCACCACT
GTGGAGCGCA AGGACGTCGG GCTAACGCTC AAGGTCAAGC CGCAAATCAA CGAGGACGGT
ACCGTCAAGA TGGTGATCTA CCAGGAGACC TCGGCGGTCA AGGCCGGCAC TGAAAAGGAT
GCCAACGGAC CGACGACATC CAAGCGCACG ATCGAGTCCA CCGTGCTGGT CGACGATGGC
AGCATCGTGG TGCTGGGCGG TCTGCTGCAG GACAAGTATT CCGGCAACCA GGACAAGGTG
CCCGGCTTGG GTGATGTGCC CTTGTTCGGC AATCTATTCA AAAGCGAGGC ACGCACCCGC
AACAAAACCA ACCTGATGGT GTTCTTGCGC CCGGTGGTGG TTCGCGACGC ACACGCCAGC
GACCAGTTGT CGATGGATCG CTACGACTTG ATGCGCTCCG GCATGAACGC TGCGCAACCG
GTGGCTAGCC AGTTGGTGCC GATCAACGAG GCGCCGCAAC TGCCCGCGCT GCCGGGTTCC
CAGCCGGCCG TCCAGCGGCT ACAGCCGCCT GAGCCACTGG GCGCAACGCC CGCCAAACCC
CAACTTTGA
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| Protein sequence | MKLRAPIKPK NAIYSIAVCA ILTGVTALFP INLLAQASAV SKPGEAVTLN FSNADIEAVA
RTMATITGTN VVVDPRVKGT LTLVTDKPVS RRAAMNQFQA ALRLQGFTMV ESAGLYKVVP
EADAKLQSGA VTVSDEAIGG ALGNQITTQI FKLNFESANN LVAVLRPLIS PNNTINVNPG
TNSLVITDYA DNLRRMARII AAVDVSNATD VEILPLKHAI ATDLAPLVLR LVESSAAGTA
PGQADTSFKT ILVAEPRSNA LILRAANPAR VALVKSLVDK LDQPAAPGLN GEAGNIHVVY
LKNADATKLA ATLRAAMTGQ APAAAAPGVA AAATVAVVAA TQSTTGGQIQ ADVATNSLII
TAPEPQYRQL RAVIDRLDGR RAQVLVESLI VEVNADRAAE FGIQWQGPLG KAGDGVIGLL
GTNFGAAGKN IINLATGAGA VAPGAGLNFG AVQRTNGVYV LGFLANFLET SGSGNVLSTP
NLLTLDNEEA KIVIGENVPF VTGSYTSNNT SGASVNPFTT VERKDVGLTL KVKPQINEDG
TVKMVIYQET SAVKAGTEKD ANGPTTSKRT IESTVLVDDG SIVVLGGLLQ DKYSGNQDKV
PGLGDVPLFG NLFKSEARTR NKTNLMVFLR PVVVRDAHAS DQLSMDRYDL MRSGMNAAQP
VASQLVPINE APQLPALPGS QPAVQRLQPP EPLGATPAKP QL
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