| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0518 |
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| Symbol | |
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| ID | 3963818 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 541203 |
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| End bp | 542825 |
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| Gene Length | 1623 bp |
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| Protein Length | 540 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637915349 |
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| Product | thiamine pyrophosphate enzyme-like TPP binding protein |
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| Protein accession | YP_521801 |
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| Protein GI | 89899330 |
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| COG category | [G] Carbohydrate transport and metabolism
[H] Coenzyme transport and metabolism
[R] General function prediction only |
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| COG ID | [COG3961] Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes |
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| TIGRFAM ID | [TIGR03394] indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCTCA CCGAATCCCT GCTGCACGCC CTCAAGGCGC ATGGCGCACG GCAAATCTTT
GGCATCCCCG GCGACTTCGC GCTGCCGTAC TTTCGTATTA TTGAGAAGTC CGCCATCCTG
CCGCTGTACA CCTTGTCACA CGAGCCGGGC GTGGGTTTTG CCGCTGACGC CTGTGGCCGT
ATCAGCGGTG GCCTGGGTGT GGCGGCTGTG ACCTATGGCG CCGGCGCCTT CAACATGGTC
AATGCGGTGG CGTCGGCCTA CGCCGAGAAA TCACCGCTGG TGGTGCTGTC GGGCGGTCCC
GGCAAGGGCG AATCTCAATC CGGACTCTTG TTGCACCACC AGGCCAAGAC ATTGGATTCG
CAGTTCCAGA TTTACAAGGA AATTACCTGC GATCAGGTTC GGCTGGATGA TGCCGAGCGC
GCCCCGGCCG ACATCGCCCG GGCGCTGGCC AATTGCCTGC GCCATTCGCA ACCGGTGTAC
ATCGAGATTC CGCGCGACAT GGTGGCCGAA CCCTGCTTGC CGGTGACGGC GCAGGCCGCT
TTGGCGGTTG ACCCGGATGC GCTGGACGCC TGCGTGACAG ACATTTTGCA GCGCCTGGCG
CAAGCCAGCG CGCCCGTCCT GATGGCGGGC GTTGAAGTGC GGCGTTTCGG GCTGGAGGCC
AAGGTCGCCG AATTGTCAAG TCGGCTGGCG CTGCCGGTGG TCACCAGTTT CATGGGTGTT
GGCTTGCTGG CGCAAACCGA GGCACCCCTG GTCGGCACCT ACCTCGGCGT GGCGGGCTTG
CCCGAGGTGA CGCAACTGGT GGAAAACTCC GACGGTTTGT TTCTGCTCGG CGTGATTGTG
TCGGACACCA ATTTCGCCGT GTCGGAGAAG AAGATCGATC TGCGCAAAAC CATACGGGCT
CTGGCGGGCC AGGTCACGAT GGGTTACCAC ACCTATTCCC ATATACCGCT GGCGGCGCTG
GTGGACCACC TGCTGCTGCG GGTGCCGGCC ACCGACAAGA AGTTTTCGGT CAAACACCAG
AGCTATCCGC ACGGCCTGGT GGCGGACGCC GCGTCCATCA CACCCACTGA CATCGCCACC
GCCGTCAATG ACCTGATGGC CAGGCACGGA AAACTGCCGA TTGCCTCCGA CATGGGTGAC
TGCCTGTTTA CCGCGCTGGA CATTGAACAC ACCGCCCTGA TCGCGCCCGG CTACTACGCC
ACCATGGGTT TTGGTGTGCC CGCCGGCCTG GGTCTGCAGG CCGCGACCGG TGAGCGCCCG
CTGATCCTGG TCGGTGACGG CGCGTTCCAG ATGACCGGCT GGGAGCTGGG CAATTGCCGA
CGCTATGGCT GGGACCCGAT CGTGCTGCTG TTCAACAACG CCAGCTGGGA AATGCTGCGC
ACCTTCCAGC CCGAGTCTGG CTTCAATGAC CTCGACCACT GGGGTTTTGC CGAAATGGCA
GCCGGCATGG GGGGAGATGG AGTGCGGGTC AACACCCGCG CCGAGCTCAA GGCCGCGCTG
GACAAGGCGA TTGCAACCCG CGGGCGTTTT CAGTTGATTG ACATCACGAT CCCGCGTGGT
GTGCTGTCAG AAACGCTTTC GCGCTTTGTG GCCGGGGTCA AGCGGCTCAG CACGCCGCAA
TAG
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| Protein sequence | MNLTESLLHA LKAHGARQIF GIPGDFALPY FRIIEKSAIL PLYTLSHEPG VGFAADACGR
ISGGLGVAAV TYGAGAFNMV NAVASAYAEK SPLVVLSGGP GKGESQSGLL LHHQAKTLDS
QFQIYKEITC DQVRLDDAER APADIARALA NCLRHSQPVY IEIPRDMVAE PCLPVTAQAA
LAVDPDALDA CVTDILQRLA QASAPVLMAG VEVRRFGLEA KVAELSSRLA LPVVTSFMGV
GLLAQTEAPL VGTYLGVAGL PEVTQLVENS DGLFLLGVIV SDTNFAVSEK KIDLRKTIRA
LAGQVTMGYH TYSHIPLAAL VDHLLLRVPA TDKKFSVKHQ SYPHGLVADA ASITPTDIAT
AVNDLMARHG KLPIASDMGD CLFTALDIEH TALIAPGYYA TMGFGVPAGL GLQAATGERP
LILVGDGAFQ MTGWELGNCR RYGWDPIVLL FNNASWEMLR TFQPESGFND LDHWGFAEMA
AGMGGDGVRV NTRAELKAAL DKAIATRGRF QLIDITIPRG VLSETLSRFV AGVKRLSTPQ
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