| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0469 |
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| Symbol | |
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| ID | 3963788 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 480726 |
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| End bp | 483020 |
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| Gene Length | 2295 bp |
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| Protein Length | 764 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637915300 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_521752 |
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| Protein GI | 89899281 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGTGACC ATTCCTTGTC GTACTGTCCC GATACCCTGG CCGCGCATGA CCCGGACCCG
AGCCGGGAAC TGGGGCCGGC GCTGGTGCAG GCCAATTTGC CCGATACCGC TGAAAAACTG
GGCTTGTTCG GCCGCTGGTG GTGCGAGCCA CAGACCGGCC AATGGGTGTT GTCGACCGGG
GCGGCGAGCC TGCTGGATGT CGGCGCCGGG CTTCATCCCA CGGGGCACAG CTGTTTTGAG
CAGGTGGTAC CCGACGATGT CCTGCGCCTG ATGGCCGGCC TGCGCGAGCC GGGTCAGGCC
ATCGCGTGCG AGTTTCGCAT CATTAACGAG TTTGACGGCT TGCGCTGGTT GCGCATGGTC
TCGGAGCCCC ACCTTGCGCC CGGGCAAGCG CTGCAGACCG GCGTCGTGGT CGATGTCACC
TCGTCCCGGC TGGCCGCGAT GCGGGAGCGC TTTTGTTTTG AATCGACCCA GTTTCTGATC
GGCACCCCCA CGCTGGGGGA GGCCGTGACC AAGGTGATTC AACTGGTCTG CGACAACCTG
GGCTGGGAGT GCGGCGCCTA CTGGTCGCTG GAGCAGTCGC AGATGGGTGA GCATCGGCTG
GCTTGCCAGC ATGAGTGGCA TCAACCGGAC TGTCCACTGG CATCGTTCAT CGCGGACACG
GCCGCCATTC GCCTGGCGCC GGGCGAAGAC CTGGTCGGCA ACGTCTGGCG CACGATGCAG
CCGGCCTGGG TGGAGGACAT GGTCAACGAC CAGGACTTTG TGCGGCGCAA AAGTGCCCAT
GCGTGTGGTT TGCAGTCTGG CTACGCCTTT GCGGTTTCTT ATGTCACGGT GGGCGGACGC
CGTCACAGCC ATGGCGTGCT GGAGTTCTAC AGCAGCCTGT CGCGCCAGCG CGAGGCTCAA
TTGCCGGGCC TGGCCGCGAC CATCGGCGAA CTGATTGCGC AGACGGTGCA GCGCCTGGAG
CAGCAGGAAC TCATCCGGCA GCTGGCGCAG GTCGACGACC TGACCGGACT GGCCAACCGC
AAACACTTCC ATCATCTGCT GGATGCGGCG TGCCTGAGCG CCACCGCATC GAGCACCTCG
TTTGCCGTCC TGAATATCGA CCTCGACCGC TTCAAGCAAA TCAACGATGC CTTCGGCCAC
GAAGCCGGCA ATCTGGTCCT GCATGAATTC GCACAGCGCT TGCAGCGACT TGGACCGGCC
GGGTCTGCGC TGGGCCGGCT GGGAGGCGAC GAGTTTGCCC TTCTGGTGAC ACCCGCCGGC
TCGGCCGCGC AACTGCAGGC CCTGGGTGAG CGGGTGCTGC TGGCCGCGCG CCAGCCGTTT
CTGTTCGAGC GGCAGGAATT GACGATGTCG GCCAGCGTGG GGATCAGCAT TTTCCCCGAC
GACGGCTGGA CCGGCTCGGA ACTCATGCGC TGCGCCGACG CCGCCATGTA CCGGCGCAAA
CACGGCGGCC GCAACGGCTT GAGTTTTTTC TCCAGCGGCA CGTCCGGTAC CCTGGCTGAG
CAGCGCTCTG CGCTGGCCAG GCAACTGACG ATGGAAGCCG AGTTGCAGCG TGCGCTGGTG
AACCATGAAT TCTTTCTGGC GTACCAGCCG GTTTTTGGCC GTGACGCCGA GCACATGGTC
GCGGTCGAGG CACTGATTCG CTGGCGCCGG CCCGGCGGCG ACGTGGTGCC GCCCGATCTC
TTCATTCCGG TGGCGGAGCA GAGCGGCCTG ATCGTGCAGA TCGGCCGCTG GGTGGTCAAG
CAGGCCTGCC ATGATCTGGC GCAGTTGCAT CGCGCTGGCT TCACCGACTT GCAGGTCAAC
GTCAACATGG CGGCGCCCGA GTTTGTCAAT CCCAATTTGC CCGGCGAATT GATGGCCGTG
CTGCAGGCGT GCGGGGTGGC GCCGCGCCAC CTCTGCCTGG AGCTGACCGA GGGCCTGGTG
ATGAAGCAGC CCGACAAGGT CATTCCCGTC ATGGTGGCCT TGCGGCAACT GGGCTGCAAG
GTCAGCCTGG ACGATTTCGG GATGGGGCAT TCATCGCTGT CGCGCATGAA GATGTTGCCG
ATCTCCTCTT TGAAAATTGA CCGCTCCTTT GTCAGCGGCC TGCCCGATGA CCGTGGCGAT
GCCGCGATCG TGCGCACCAT TCTGGACCTG GGGCGCCACA TGAAGCTGCA GGTCATCGCC
GAAGGGGTCG AGACCGACGC GCAGCTCCTG TTCTTGCGCC AATTCGGATG CACCCTGATT
CAGGGTTTTC TATTGGGCCG ACCCAAAACA GTACCCGAGC TGATGGCAGC TCATCCACAA
ACCACCCGCG ACTAG
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| Protein sequence | MCDHSLSYCP DTLAAHDPDP SRELGPALVQ ANLPDTAEKL GLFGRWWCEP QTGQWVLSTG
AASLLDVGAG LHPTGHSCFE QVVPDDVLRL MAGLREPGQA IACEFRIINE FDGLRWLRMV
SEPHLAPGQA LQTGVVVDVT SSRLAAMRER FCFESTQFLI GTPTLGEAVT KVIQLVCDNL
GWECGAYWSL EQSQMGEHRL ACQHEWHQPD CPLASFIADT AAIRLAPGED LVGNVWRTMQ
PAWVEDMVND QDFVRRKSAH ACGLQSGYAF AVSYVTVGGR RHSHGVLEFY SSLSRQREAQ
LPGLAATIGE LIAQTVQRLE QQELIRQLAQ VDDLTGLANR KHFHHLLDAA CLSATASSTS
FAVLNIDLDR FKQINDAFGH EAGNLVLHEF AQRLQRLGPA GSALGRLGGD EFALLVTPAG
SAAQLQALGE RVLLAARQPF LFERQELTMS ASVGISIFPD DGWTGSELMR CADAAMYRRK
HGGRNGLSFF SSGTSGTLAE QRSALARQLT MEAELQRALV NHEFFLAYQP VFGRDAEHMV
AVEALIRWRR PGGDVVPPDL FIPVAEQSGL IVQIGRWVVK QACHDLAQLH RAGFTDLQVN
VNMAAPEFVN PNLPGELMAV LQACGVAPRH LCLELTEGLV MKQPDKVIPV MVALRQLGCK
VSLDDFGMGH SSLSRMKMLP ISSLKIDRSF VSGLPDDRGD AAIVRTILDL GRHMKLQVIA
EGVETDAQLL FLRQFGCTLI QGFLLGRPKT VPELMAAHPQ TTRD
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