| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0396 |
|---|
| Symbol | |
|---|
| ID | 3961610 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 402972 |
|---|
| End bp | 404048 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637915229 |
|---|
| Product | radical SAM family protein |
|---|
| Protein accession | YP_521681 |
|---|
| Protein GI | 89899210 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1180] Pyruvate-formate lyase-activating enzyme |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGAAT CCAGCTACCC CGGCCGTTAC TGGCACTGGC TCGATGACGG CCGCATGCAA
TGCGACCTGT GTCCGCGCGA CTGCCGCTTG CACGAGGGCC AGCGCGGCGC CTGCTTTGTG
CGCATGCGCC AGGGTGGGCA GATGATTCTG ACCACCTACG GGCGCTCATC GGGCTTTTGC
ATCGACCCGA TCGAGAAGAA GCCGCTGAAC CACTTTTACC CCGGCAGCAG CGTGCTGTCG
TTTGGCACGG CCGGGTGCAA CCTGGCCTGC AAGTTCTGTC AGAACTGGGA CATCAGCAAG
TCGCGCGACA TGGACCGCCT GATGGACCAG GCCTCGCCCG AGGCCATCGC CATGGAGGCC
GTCAAATACG GCTGCAAGAG TGTCGCCTTC ACCTACAACG ACCCGGTGAT CTTTGCCGAA
TATGCGATGG ATGTGGCCGA TTCCTGCCAC GCACGCGGCG TGCAGGCGGT GGCCGTGACG
GCCGGCTACA TGCACGATCA GCCACGGCGT GATTTTTATG CCAAGATGGA CGCCGCCAAT
GTCGACCTGA AAGCCTTCAC CGACGACTTC TATTTCAAGC TGACCGGCTC GCACCTGCAG
CCGGTGCTCG ACACGCTGGT CTATCTCAAG CGCGAAACCC GGGTGTGGTT CGAAATCACC
ACCCTCTTGA TCCCCGGTCA CAACGATTCG AACGAGGAAA TCACGGCCAT GAGCCGCTGG
GTCATGCAGG AACTCGGGCC CGATGTGCCG CTGCACTTCT CGGCCTTTCA TCCAGACCAC
AAAATGCCGG ACGTGCCCGC CACCCCTGCG GCCACACTGG TACGCGCCCG CAACATCGCG
CTCAAGGCGG GCTTGCACTA TGTGTACACC GGCAATGTGC ATCACGCCGA AGGCGACACC
ACCTTTTGCC CGAGCTGCCA CGCGCCGCTG ATCGTTCGCG ACTGGTATCA GATCAACCAA
TACCGGCTCG ACACCAACGG TCACTGCCCG GACTGCGGCG CTGCCGTCGC CGGGCGCTTT
GACGCGCAAG CGGGCGACTT CGGCCGCCAG CGCATCCCGA TTGCCATAGG CGCCTGA
|
|---|
| Protein sequence | MQESSYPGRY WHWLDDGRMQ CDLCPRDCRL HEGQRGACFV RMRQGGQMIL TTYGRSSGFC
IDPIEKKPLN HFYPGSSVLS FGTAGCNLAC KFCQNWDISK SRDMDRLMDQ ASPEAIAMEA
VKYGCKSVAF TYNDPVIFAE YAMDVADSCH ARGVQAVAVT AGYMHDQPRR DFYAKMDAAN
VDLKAFTDDF YFKLTGSHLQ PVLDTLVYLK RETRVWFEIT TLLIPGHNDS NEEITAMSRW
VMQELGPDVP LHFSAFHPDH KMPDVPATPA ATLVRARNIA LKAGLHYVYT GNVHHAEGDT
TFCPSCHAPL IVRDWYQINQ YRLDTNGHCP DCGAAVAGRF DAQAGDFGRQ RIPIAIGA
|
|---|
| |