| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0080 |
|---|
| Symbol | |
|---|
| ID | 3960081 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 81242 |
|---|
| End bp | 81565 |
|---|
| Gene Length | 324 bp |
|---|
| Protein Length | 107 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637914919 |
|---|
| Product | collagen triple helix protein |
|---|
| Protein accession | YP_521373 |
|---|
| Protein GI | 89898902 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000587226 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTACT CGAATCTATT GCTCGCCACG GCGGCATCGT TGGCATTGGC TGGATGTTTT
TCCCTTCCCG CAGGCCCGGC CGGCCCCCAA GGCGCAACGG GCGCAACCGG TGACACGGGC
TACACGGGCG CCACGGGTCG CACCGGCGGC ACGGGTGCAA CCGGTGCCAC TGGCTATACC
GGCGCAACCG GCGGCGCTGG CGCAACTGGC GATACCGGCG CGACTGGCTA CACCGGCGCG
ACTGGCAGCA CTGGAGCCAC TGGCCGGACC GGTGCCACAG GCAGCGTGCC CGCTGGCACC
GTCGTGATTG TGCCGGCTCA GTAA
|
|---|
| Protein sequence | MKYSNLLLAT AASLALAGCF SLPAGPAGPQ GATGATGDTG YTGATGRTGG TGATGATGYT
GATGGAGATG DTGATGYTGA TGSTGATGRT GATGSVPAGT VVIVPAQ
|
|---|
| |