Gene Rfer_0005 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_0005 
Symbol 
ID3960241 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp6309 
End bp7871 
Gene Length1563 bp 
Protein Length520 aa 
Translation table11 
GC content62% 
IMG OID637914844 
Productdiguanylate cyclase 
Protein accessionYP_521298 
Protein GI89898827 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.379493 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCGCCA AGAAGCCTTT TGAAATTGCC CGTGAAACGC TCAGGCAACT CACCGCACGC 
AAGTTGGCTC CAACGCCGAT CAATTACCAG GCTATTTACA ACGAGGTTGC GGGGGTGGCC
ACCGACCCCC CTTTTCCGAC CGACCGCTTG CGCGATATCG CCCAGGCCCT GCCGACAAAA
ACACCCGGGC AGCAAAAGCA GCGTGCTTTG TTGGATTCCG CCATCGGGCA ACTCAACTGG
GACGGCGTAA AGAGCGCCCT CATGGCTTAC GGCGGCTTCA GCCCACCGGC AGCGGACCCG
GCCACGGCCA CGCCATCGAC CGGGCTGCCG ATGCCGGGCG CCAGCGCCCC GGGCGACGTG
AGCGCACCCG CGCTGACCTT TGATTTTTTG CAGCAAATGG CACGGTTGAT TGAGTTCACA
CTGCCCGCAC TCGGTTCCGA TGATGCCCGC TTCAACGAGC AGACCCAGAC CCTGCTCAAA
GCCATGCGCC AACCTGGGGC TGACGTGGTG GCGCTCAAAT TGATGCTGGG CAGCTTTAGC
GACCGTCTTT CCTTTGCCGC GGAAGATCAG GCCGAGATCA AGGTCACGCT ACTCAAGCTG
CTGCACCTGA TCATCGAAAA CATCGGTGAG CTCAGTCTGG ATGATCGTTG GCTCAAGGGC
CAGATTGAGG CCCTGATGAC GGCGTCGACG CCTCCGCTCA CCTTGCGCCG TCTCGACGAC
GTGGAGCGGC GCCTGAAGGA CGTGATCTTC AAACAGACCG AGGCCAAGGG TCGGGCCCTG
GAGGCGCAGG AAGAGATGCG CCAGATGCTC GCCACCTTCA TCGAGCGGCT GTCGCAAATG
ACCGAGTCCA CCAGCGCCTA CCGCGGCAAG CTCGATGACA ACGCACGCCT GATCGAGCAA
GCCAGGACCC TGGCTGAAAT TGCGCCGGTC TTGAAAGAAG TGGTCGGCGC GACCCGCACC
ATGGCCCACG ACAGCCTGAC GGCACGTGAT GAACTGCGTG GCATGCGCGA AAAGGCGCAA
AGCACCGAGG CCGAGCTCGT CAAGCTGCAC CAGGAGCTTG ACCGCGTCAG CTCCCAGGCG
CGGCATGACC CGCTGACCGG GGCACTTAAT CGCAAGGGGC TGGAGGAGGC CGTCAACCGG
GAGGTGTCCA ATGTGCGACG CAAAGAGACG CCGCTGTGTG TGGCCCTGCT GGACATTGAC
AACTTCAAGA AGCTCAATGA CGCCCTGGGT CACGCGAGCG GGGATGTCGC GTTGGCGCAT
CTGGCCACGG TAACGCGTGA GGTCATGCGC CCGCATGACA CGCTGGCGCG CTACGGCGGT
GAAGAGTTCG TGATTCTGAT GCCCGACACC GCCCTGGATA ATGGCATTGA AGCCATGACC
CGGTTGCAGC GCGAGCTGAC CACACGTTTC TTTCTGGCAG GCACCGAGAA GGTGCTGATT
ACCTTCAGCG CCGGTGTGGC GCAACTGGCC ACTGACGAGA CCGGTCAGAG CGCCATCAAG
CGCGCCGACC AGGCCATGTA CCTGGCCAAA CGCGCGGGCA AGAATCGCGT GTTGGGCGCT
TAA
 
Protein sequence
MIAKKPFEIA RETLRQLTAR KLAPTPINYQ AIYNEVAGVA TDPPFPTDRL RDIAQALPTK 
TPGQQKQRAL LDSAIGQLNW DGVKSALMAY GGFSPPAADP ATATPSTGLP MPGASAPGDV
SAPALTFDFL QQMARLIEFT LPALGSDDAR FNEQTQTLLK AMRQPGADVV ALKLMLGSFS
DRLSFAAEDQ AEIKVTLLKL LHLIIENIGE LSLDDRWLKG QIEALMTAST PPLTLRRLDD
VERRLKDVIF KQTEAKGRAL EAQEEMRQML ATFIERLSQM TESTSAYRGK LDDNARLIEQ
ARTLAEIAPV LKEVVGATRT MAHDSLTARD ELRGMREKAQ STEAELVKLH QELDRVSSQA
RHDPLTGALN RKGLEEAVNR EVSNVRRKET PLCVALLDID NFKKLNDALG HASGDVALAH
LATVTREVMR PHDTLARYGG EEFVILMPDT ALDNGIEAMT RLQRELTTRF FLAGTEKVLI
TFSAGVAQLA TDETGQSAIK RADQAMYLAK RAGKNRVLGA