| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0003 |
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| Symbol | |
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| ID | 3960239 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 2723 |
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| End bp | 5335 |
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| Gene Length | 2613 bp |
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| Protein Length | 870 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637914842 |
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| Product | DNA gyrase, B subunit |
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| Protein accession | YP_521296 |
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| Protein GI | 89898825 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
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| TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.41249 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGAAG AAAACAAGCC AGTTCAGCCC CCCGAGAACG AGGTCAACGG CGAAGATGCC
GTTCATACAG GTGAAGGCGC CAGCGACAGC TCCAACTTTC AGCCCACCAT TGATGCACAC
CAGATCGGTG CCTCCGAGGC CTATGGAGAA GGCTCGATTC AAATTCTGGA AGGGCTGGAG
GCGGTGCGCA AGCGCCCCGG CATGTACATC GGCGACACCT CGGATGGCAC CGGCTTGCAC
CACTTGGTGT TCGAGGTGGT GGACAACTCG ATTGACGAGT CATTGGCCGG GCACTGTGAC
GACATTCTGG TCACCATCCA CTCCGACAAC TCAGTCAGCG TGGTCGACAA CGGGCGCGGT
ATTCCAACCG GCGTCAAAAT GGACGACAAG CACGAGCCCA AGCGCAGTGC GGCTGAGATT
GCCCTGACCG AATTGCATGC AGGCGGCAAG TTCAATCAAA ACAGCTACAA AGTCTCCGGT
GGCCTGCACG GCGTCGGTGT GAGCTGCGTC AACGCCCTGT CCAAAATGTT GCGCCTGACC
ATCCGCCGCG ATGGCAAGGT ACATGTGATG GAGTTCAGCA GAGGGTTTGT GCAGAACCGC
GTCACCGAGG TGGTGAACGG CGTGGAAGTT TCGCCCATGA AGGTGATTGG CACAACCGAA
AAGCGCGGCA CCGAGGTGCA CTTTCTGCCG GACTCTGAAA TCTTCCAGCA AAACAGTGAT
TTTCACTACG AAATCCTGAG CAAACGCCTG CGTGAGCTGA GCTTCCTCAA CAACGGCGTG
CGTATCCGGC TCAAAGACGA GCGCAGCGGC AAGGAAGACG ACTTTTCGGG TGCCGGGGGC
GTGCGTGGTT TTGTCAACTT CATCAACAAA GGCAAAACCG TCCTCAACCC CAACATTTTC
CATGCGCTGG GGGACCGCCA AAGCGACCAG GACACCAACA TCGGCGTTGA AGTGGCCATG
CAGTGGAACA GCGGCTACAA CGAACAGGTT CTGTGTTTCA CCAACAACAT CCCGCAGCGC
GACGGCGGCA CCCACCTGAC CGGCCTGCGT GCTGCCATGA CGCGCGTCAT CAACAAGTAC
ATTGACGACA GTGAGCTGGC CAAGAAGGCC AAGGTCGAGG TCACCGGCGA TGACATGCGC
GAAGGCCTGA CCTGCGTCCT CTCGGTCAAG GTGCCCGAGC CCAAGTTCAG CAGCCAGACC
AAGGACAAGC TGGTCAGCAG CGAAGTACGC GGCCCGGTGG AAGACATTGT CAGCAAGCTG
CTCTACGACT ACCTGCAGGA GCGTCCGGCC GATGCCAAAA TCATCGTCGG CAAGATCATT
GAAGCGGCGC GTGCGCGCGA AGCCGCCCGC AAAGCGCGCG ACATGACACG CCGCAAGGGT
GTACTCGACG GCATGGGCTT GCCCGGCAAG CTGGCCGACT GCCAGGAGAA AGACCCGGCG
CTGTGCGAAA TCTACATTGT CGAAGGGGAC TCCGCCGGCG GCTCCGCCAA ACAGGGGCGC
GACCGCAAGT TTCAGGCGAT TCTGCCGCTG CGCGGAAAAA TTTTGAACGT AGAAAAGGCC
CGCTACGAAA AGCTGCTGAC CAGCAATGAA ATTCTGACGC TCATTACCGC CCTGGGCACC
GGCATCGGCA ATGCCGGCGG CAGCACCGGC AGCGACGACT TCAACGTTGC CAAGCTGCGC
TACCACCGCA TCATCATCAT GACCGATGCC GACGTCGACG GCGCCCATAT CTGCACGCTG
CTGCTCACCT TCTTTTACCG CCAGATGCCC GAGCTGGTGG AACGTGGCCA CATTTACATT
GCCCAGCCGC CCTTGTACAA GGTGAAAGCC GGAAAAGAAG AGTTGTACCT GAAGGACGGT
GACGAGCTCG ACCGCTTCCT CCTGCGCATT GCCTTGGTGA ACGCCTCTGT CTTTACGGGT
GGCGAAAACG GCACCACCCT CAAAGGGGAG ACTTTGGCCG AACTGGCGCG CAAGCACCAG
ACAACCCAGG CCGTCATTGC ACGCCTGCGT AACTTCCTGG ACGCTGAAGC GCTGCGCTCG
GTGGCCGACG GCGTCGCTCT GAACCTGGAC ACGGTGGCGG ACGCTGAAAT TTCGGCCGCG
GCGCTGCAAG CGCGCTTGCC CGATGCCGAA GTGGCCGGTG AATTCGACGT CGCCTCCGAC
AAGCCGATTC TGCGCATCAG TCGCCGCCAT CACGGCAACA TCAAGAGCAG CGTGCTGACA
CAAGACTTTG TGCATGGCGC CGATTACGCC GTTCTGGCCG ATGCCGCCAG CACGTTCAAG
GACTTGCTCA GCCCGGGAGC CATCGTGATG CGGGGCGAAG GTGAGCGTCA AAAAGAGGAA
AAAGTGAGCG ACTTCCGGCA AGCCATGACC TGGCTGCTGG CCCAGGCCGA ACACGCCACT
TCACGTCAAC GCTACAAAGG ACTGGGCGAA ATGAACCCGG CGCAACTGTG GGAAACCACC
ATGGACCCGA CCGTGCGCCG CCTGCTCCGG GTGCAAATTG ATGACGCCAT TGAAACCGAC
CGCGTATTCA CCATGCTGAT GGGCGATGAG GTGGAGCCAC GCCGTGAATT CATCGAAGCC
AACGCGCTGC GCGCTGGCAA TATTGACGTC TGA
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| Protein sequence | MTEENKPVQP PENEVNGEDA VHTGEGASDS SNFQPTIDAH QIGASEAYGE GSIQILEGLE
AVRKRPGMYI GDTSDGTGLH HLVFEVVDNS IDESLAGHCD DILVTIHSDN SVSVVDNGRG
IPTGVKMDDK HEPKRSAAEI ALTELHAGGK FNQNSYKVSG GLHGVGVSCV NALSKMLRLT
IRRDGKVHVM EFSRGFVQNR VTEVVNGVEV SPMKVIGTTE KRGTEVHFLP DSEIFQQNSD
FHYEILSKRL RELSFLNNGV RIRLKDERSG KEDDFSGAGG VRGFVNFINK GKTVLNPNIF
HALGDRQSDQ DTNIGVEVAM QWNSGYNEQV LCFTNNIPQR DGGTHLTGLR AAMTRVINKY
IDDSELAKKA KVEVTGDDMR EGLTCVLSVK VPEPKFSSQT KDKLVSSEVR GPVEDIVSKL
LYDYLQERPA DAKIIVGKII EAARAREAAR KARDMTRRKG VLDGMGLPGK LADCQEKDPA
LCEIYIVEGD SAGGSAKQGR DRKFQAILPL RGKILNVEKA RYEKLLTSNE ILTLITALGT
GIGNAGGSTG SDDFNVAKLR YHRIIIMTDA DVDGAHICTL LLTFFYRQMP ELVERGHIYI
AQPPLYKVKA GKEELYLKDG DELDRFLLRI ALVNASVFTG GENGTTLKGE TLAELARKHQ
TTQAVIARLR NFLDAEALRS VADGVALNLD TVADAEISAA ALQARLPDAE VAGEFDVASD
KPILRISRRH HGNIKSSVLT QDFVHGADYA VLADAASTFK DLLSPGAIVM RGEGERQKEE
KVSDFRQAMT WLLAQAEHAT SRQRYKGLGE MNPAQLWETT MDPTVRRLLR VQIDDAIETD
RVFTMLMGDE VEPRREFIEA NALRAGNIDV
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