Gene Jann_4107 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_4107 
Symbol 
ID3936596 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp4214725 
End bp4215510 
Gene Length786 bp 
Protein Length261 aa 
Translation table11 
GC content60% 
IMG OID637906493 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_512049 
Protein GI89056598 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0395] ABC-type sugar transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGCGA TCAAACTGCT CTGCCTGCTG CTTCTGGCCG TCTTCATCCT GCTCCCCTTC 
GTGCAGGTGG CACAGCTCAG CGTGATCTCC ACCCTCGGGA CGCCCGACGC GCCCCTGGGC
ACCGTCACCA CCCTGAATTA CCGCAACATC TTTGCATCCA GCGCGCTGAC GTCGTCGCTG
GTGAATTCCG TGACCTATGT GACCCTCAAC GTGGCCCTCA CCCTGCTGGT CGCCCTGCCC
GCCGCCTATG CCATCTCACG CCACCAGTTT CGCGGCAAGC GGGCGTTCTT CATCACGTTG
CTGGCGTTTC GCGTGACCCC GCCTGTCGTA CTTTCGCTGC CAGTCTTCAT CTGGTTTTCG
CAGCTGAACC TGATCAACAC GCCCATTGGA ATCGCCCTGG TCCATTGCGT CTTCAACGTG
CCCATCGCGA TCTGGATATT GGAAAGCTTC ATTTCTGCCG TTCCCCGCGC CTATGACGAG
TCCGCCAGGC TGGACGGCTA TTCCACGACA CGATTCTTCT ACACCTTCCT CATCCCCGTC
ATCGCGCCGG GCATCGGGGT CACGATGTTC TTCTGCTTCG TGTTCTCATG GGTGGAGGTC
GTGTTCGCGC GCACCCTGAC CGTGACAGAC GGCAAGCCGA TCACCATGGC GATCAGCAAT
CTGTTCGGCT TCAACACGGA TGTCGGGCTG GTTATGGCGA TGACCGTTTT TTCGCTGCTG
CCGGGGTTGG TGATGATCTA TTTCGTCCGG CACCACATCG CGCGCGGGTT TGTGGTACGG
GCCTAG
 
Protein sequence
MKAIKLLCLL LLAVFILLPF VQVAQLSVIS TLGTPDAPLG TVTTLNYRNI FASSALTSSL 
VNSVTYVTLN VALTLLVALP AAYAISRHQF RGKRAFFITL LAFRVTPPVV LSLPVFIWFS
QLNLINTPIG IALVHCVFNV PIAIWILESF ISAVPRAYDE SARLDGYSTT RFFYTFLIPV
IAPGIGVTMF FCFVFSWVEV VFARTLTVTD GKPITMAISN LFGFNTDVGL VMAMTVFSLL
PGLVMIYFVR HHIARGFVVR A