Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_4017 |
Symbol | |
ID | 3936505 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | - |
Start bp | 4120509 |
End bp | 4121246 |
Gene Length | 738 bp |
Protein Length | 245 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637906402 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_511959 |
Protein GI | 89056508 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.980517 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGGATT GGACGGGAAA GCGGTATTGG CTGATCGGAG CGTCAGACGG TCTTGGGCGT GAATTGGCTG GCCTGATGAG CCGATCCGGC ATCGAAGTGG TGCTGTCCGC GCGATCTGAG GACAAGCTGA ACGCGGTGGC CGAAGACTTG CCCGGTGCGG CGACGGTCGT GACCGTAGAC GTCTCGGACC GCGCGTCGGT GGAGGCGGCG GCGGAGGCCG TGGGCGAGGT TGACGGCGTC GTGTTCCTGG CCGGGCTGGG GACGCTGATC AAGGCCACGG AGTGGGACGC CGACAAGGTC GAGCAATTGT TCGATGTCAA CCTGATCGGG GCCGCGCGGG TCATCGGCCA GGTCATTGGC CCCATGGTGG AACGCAATTC CGGGCACATC ATGCTGATCG GATCGCTCTC GGCCTATCGC GGCCTGCCCG GCGCCATCGG GTATTCGGCC TCCAAGGCGG GGCTGATGTC GCTGGCGGAA TCCATGCACG GGGACCTGAA AGACACCAAC GTGCTCGTGC AGCTGGCCAA CCCCGGCTAT ATCGAGACCC AGATGCAGGA CAACAACCCG CATCCCAAGC CGTTCATGAT GACGCCCGAG GTCGCCGCGC GCGAGGTGTT CGAGCAGATG AACACCGATA CGTTCCACAA GGCGTTCCCG ATTGGCTTCA GCCTGCTGTT CCGCCTGTCG CGGTTCCTGC CGACGTCGGT CTATGAATGG ATCTTCTTCC GCCGCTGA
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Protein sequence | MRDWTGKRYW LIGASDGLGR ELAGLMSRSG IEVVLSARSE DKLNAVAEDL PGAATVVTVD VSDRASVEAA AEAVGEVDGV VFLAGLGTLI KATEWDADKV EQLFDVNLIG AARVIGQVIG PMVERNSGHI MLIGSLSAYR GLPGAIGYSA SKAGLMSLAE SMHGDLKDTN VLVQLANPGY IETQMQDNNP HPKPFMMTPE VAAREVFEQM NTDTFHKAFP IGFSLLFRLS RFLPTSVYEW IFFRR
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