| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3985 |
|---|
| Symbol | |
|---|
| ID | 3936472 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 4090465 |
|---|
| End bp | 4090974 |
|---|
| Gene Length | 510 bp |
|---|
| Protein Length | 169 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637906369 |
|---|
| Product | twin-arginine translocation pathway signal |
|---|
| Protein accession | YP_511927 |
|---|
| Protein GI | 89056476 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2335] Secreted and surface protein containing fasciclin-like repeats |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0926621 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.568461 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCGTC GTCAATTCAT CACCCGCACC GCAGGCCTCG CCGTTGCAGC CCCCTTCACC
GGACTGGCCG CATCGCCCGC CCTGGCCGTC ACCGGCAGCT CCAACATCGT GGAACTTGCC
GCGGCAACAC CTGATCTCTC CACGCTCGTG ACCGCTGTTC AGGCCGCAGG TCTTGTGGAC
ACGCTGTCCT CGCGCGGCAA CTTCACCGTG TTTGCGCCCA CGAACCGCGC GTTTGCGCAT
TTGCCTGCTG GTACGCTTGA TGCGCTGCTG GCCGACATCC CGGCCCTGAC CAACGTGCTC
ACGTACCATG TCTCGCCCGA CTATTATCCG GCCTCGCAAT TCGTGGGTCA GTTCGGGGCC
GTCCATCAGA CGGTTCAAGG CCAGCCGATC CGCGTGGACG GGCGCAGCGG CACCGTTCTC
CTGAATGGCA ACACCCGGGT GACGACGGCG GATGTCTTCG CCTCCAACGG CGTGGTTCAC
ATCATTGATG CGGTTCTGCT GCCCCATTGA
|
|---|
| Protein sequence | MDRRQFITRT AGLAVAAPFT GLAASPALAV TGSSNIVELA AATPDLSTLV TAVQAAGLVD
TLSSRGNFTV FAPTNRAFAH LPAGTLDALL ADIPALTNVL TYHVSPDYYP ASQFVGQFGA
VHQTVQGQPI RVDGRSGTVL LNGNTRVTTA DVFASNGVVH IIDAVLLPH
|
|---|
| |