Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_3944 |
Symbol | |
ID | 3936425 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | - |
Start bp | 4043650 |
End bp | 4044918 |
Gene Length | 1269 bp |
Protein Length | 422 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637906322 |
Product | extracellular solute-binding protein |
Protein accession | YP_511886 |
Protein GI | 89056435 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.282645 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCAAAC TGCAAACCCT GCGGCTGACC TGTGCTGCGA CCGCTCTGAT GGCCGCGGGC ACCGCTCACG CCGATGAAGT GAGCTTCCTG TGCTATCAAA ACGGCAATGA ATGCGACGTG CTGGCGGCAA TTGCGGCGGA TTATGAGGCC GAAACCGGTC ACACCGTCGC CATGGAGGTC GTGGGCTATG AGATCGTCCG CGATCAGTTG GAAAACCAGC TGCAAACCGA TGCCGCGCCT GACGTGGCCC GCGTGACCAA TCTGGGCGGT TTGAACCAGT ATTACCTGGA CCTGACGCCC TATGTGGATG CCGATTACAT GGAAGCCGCC TATGGCGCGG TTCTGCCGTG GTATCGCGCG CCCGGCGGTG AAGACACGGG CATCTACGGC TGGCCGACCG AGCTGACCGT GACCGGCCCC TATATCAACG TCACCATGTT TGACGACGCG GGCGTCGAGA TCCCCGGCGA CGGGGCCACG TGGGATGAGT GGATGGTTGC GCTTGGCGAG GTTCAGGAAA CGCTTGGCAT GGACGCAGCC TTCGCGATGG ACCGCACCGC CCACCGTTGG GCCGGGCCTG CGTTCTCCTA TGGCGCTGCC TTCTTTGACG ATGCAGGCGC GCCGATCCTC GTGGACGAGG GCTTTACCAT CTACGCCGAG ACCTTCGTGG GTTGGCACGA GAGCGGGTTG ATGCCCGCCG ATGGCTGGCC CGCAGGCACC GGCACGGCCT ACCGCAACGC CGCGCCTCTG TTCCTGTCTG GATCGGTTGC CATGCATATG TCGGGATCCT GGATGATCGG CAACTACGCC GAAAACATCA CCGATTTTGA ATGGCGCGCC GTTCCCGCCC CCTGCGGTCC CGGCGGCTGT GGCGCAATGC CCGGCGGCGC TGGCATCGTG GCGTTCAACT CCACCGATGT GCCCGAGGCG GCAGCGGGCT TGATCGCCCA TTTCGCGTCC GAGGAAAACA CGGCACGCTT CGCGGCTGAG ACGTCCTCCA TCACCGCGCA TGCAGGCCTG CAAGCATCCG GGGTGGATTA CGGCGATGCG GATCCGGCGG TGGCGCAGGC CCTGTCGACC TTCGCGGCCT CCATCGGCAC AGCGGCAGAG ACGACACCTC AGGCCTTCAC CTTCCAGGGC TACGCCCAGA ACTTCGTGAT CTACGGCGTG GTGCCGGACT ACATCACGCA GGTCATCACC GGTGAATCCA CGCTGGAAGA TGCGTTGGCT GCCATCGACG CGGACGTCGC CGCACAGATC GCGGAATAA
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Protein sequence | MTKLQTLRLT CAATALMAAG TAHADEVSFL CYQNGNECDV LAAIAADYEA ETGHTVAMEV VGYEIVRDQL ENQLQTDAAP DVARVTNLGG LNQYYLDLTP YVDADYMEAA YGAVLPWYRA PGGEDTGIYG WPTELTVTGP YINVTMFDDA GVEIPGDGAT WDEWMVALGE VQETLGMDAA FAMDRTAHRW AGPAFSYGAA FFDDAGAPIL VDEGFTIYAE TFVGWHESGL MPADGWPAGT GTAYRNAAPL FLSGSVAMHM SGSWMIGNYA ENITDFEWRA VPAPCGPGGC GAMPGGAGIV AFNSTDVPEA AAGLIAHFAS EENTARFAAE TSSITAHAGL QASGVDYGDA DPAVAQALST FAASIGTAAE TTPQAFTFQG YAQNFVIYGV VPDYITQVIT GESTLEDALA AIDADVAAQI AE
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