| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3893 |
|---|
| Symbol | |
|---|
| ID | 3936374 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 3988756 |
|---|
| End bp | 3989805 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637906271 |
|---|
| Product | beta-lactamase-like |
|---|
| Protein accession | YP_511835 |
|---|
| Protein GI | 89056384 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0491] Zn-dependent hydrolases, including glyoxylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.042904 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATCA ATCGTGCCAT GACCAATCCC ATCCGCACTC CGTTCCCGGA TGCACCGACA
GGGGGGACAG CCGTCGAGGT GGCCGAAAAC GTCCTCTGGT TGCGGGTCCC GCTGCCAATG
GCGCTGGACC ACGTCAACGT CTATGCGCTG CGTGATGAGG ATGGCTGGAC CGTTGTGGAT
ACCGGCGTGA ATTCTCGCCG CACGATTGCC TTGTGGGAAG AGATCCTCGC CGGTCCACTA
CAAGGCGCGC CTGTGACGCG CTTGATCGTC ACGCACCATC ACCCCGATCA TGTGGGCCTT
GCGGGCTGGT TCCAGGCGCG CGGTGCCGAG CTGCATATGA CGCGTACCGC ATGGTTGTTT
TCGCGGATGT TGACGCTGGA TGAACAGGCT GAGGCGACCG ACGAACAGGT GCAATTCTGG
ATCGACGCGG GCATGGATGC GGAGGTTCTG GCGACCCGCA AAGCGGAGCG GCCCTTCAAC
TTCGCAGACA TCGTGTACCC GATGCCACTT GGGTTCACCC GCCTCCATGA AGGGCGCACG
ATCCGGATGG GTGGACGTAT CTGGGATACC CGCTTCGGTC ACGGCCATGC GCCCGATCAC
GCAACATTCT GGAGCCAGGA TGGGGATCTT GTGATCGGCG GGGACCAGCT GCTGGCGACG
ATTTCTCCAA ACATCGGCGT CTACGCGACC GAGCCCGATG CGGACCCGTT GGGGGAGTGG
ATGATGGCTT GCGAGGCCCT CCAACCCTTT GCGCGCGAAA GCCAACTGGT TCTGCCCGGC
CATAAGCTGC CCTTCACCGG GCTGCCGTCG CGGATGCGTC AGTTGATCGA CAATCACCAC
GGTGCGTTGT CGCGGTTACG CGATCACATC GCCCAAGGCC CGTGCAGCGC GGCGGAGTGC
TTTCCACCGC TCTTCAAGCG CAAAATTGAC GATGGGACCT ATGGCCTCGC GCTCGTGGAG
GCGGTGGCGC ATCTCAACCA CATGCATCAA CTGGGATATG TGACCCGTGC CCGCCGCGCC
GACGGGGCCT GGGCCTACAG CCTCGCATAG
|
|---|
| Protein sequence | MTINRAMTNP IRTPFPDAPT GGTAVEVAEN VLWLRVPLPM ALDHVNVYAL RDEDGWTVVD
TGVNSRRTIA LWEEILAGPL QGAPVTRLIV THHHPDHVGL AGWFQARGAE LHMTRTAWLF
SRMLTLDEQA EATDEQVQFW IDAGMDAEVL ATRKAERPFN FADIVYPMPL GFTRLHEGRT
IRMGGRIWDT RFGHGHAPDH ATFWSQDGDL VIGGDQLLAT ISPNIGVYAT EPDADPLGEW
MMACEALQPF ARESQLVLPG HKLPFTGLPS RMRQLIDNHH GALSRLRDHI AQGPCSAAEC
FPPLFKRKID DGTYGLALVE AVAHLNHMHQ LGYVTRARRA DGAWAYSLA
|
|---|
| |