| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3804 |
|---|
| Symbol | |
|---|
| ID | 3936284 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 3889368 |
|---|
| End bp | 3890873 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637906182 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_511746 |
|---|
| Protein GI | 89056295 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000726853 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0000406829 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCTCGA TCAAAACAAC CGCCCGCGCG CTGGCACTCA TAAGCACCGC CCTCGCGGCC
CCATTGTCCG CGCAAACGCT TGATCTTGCA TGGTCCCAGG ACGCCACCGG CCTTGATCCG
CACACGCAGC CCGGCTTCGC GACGATCCGC CTGCTGGAAT TGATGTATGA GCCGCTTTTG
CGTCTGGATG CCAACCTGGA GCTTCAGCCC GCCATCGCGC AAAGCTGGTC CTTCTCCGAC
GATGGTCTGC AACTGACATT CCAACTGGAC CCCGCGGCGA TGTTCCACGA CGGCACATCC
GTGACCTCTG CCGATGTCCG CGCCTCGTTC GAGCGTATTC TGGACGAGGA AACCGGCGCG
ATTTCGCGGG CGAACTACAC GTCCATCATC AATATCGAAA CACCCGATGA TGCCACCGTG
GTGTTTGAAC TGGATCGCCC CGATGCGCCG ATCCTCAACG GTCTGGCCAC GGTGAACGCC
GCCGTCCTGC CTGCGTCGGC GATTGAGGCA GGCACGATCG CCACGGAAGT CGTGGGCTCC
GGCCCGTTCA TGTTGGACGC CCGCACGCCC AACGCCAGCG CCACCCTGAC GAGTTTCGCG
GATTGGCATG GCGGCGACGT GGCCTACGAC ACCCTGTCCA TCAGCGTGCT GCCCGATGAA
ACCGCGCTTC TGGGTGCCTT GCGTGCCGGT CAGGCCGATT TTGCATTGAT CAACGATCCG
TTGGTCGCGA CGCTGGTGCC CTCTACGGAT GGATTGACGC TGAACACCGC GCCCACGCTC
AGCTACTATG TGCTGCAACT CAACGCAGCC CGGGAGCCGA TGGACTCGCT GCCCCTGCGG
CAGGCGATCA GCTGCGCGAT CAACCGCCAG GACATTCTGG ATGCCGCCCT TCTGGGTGAG
GGGGAGGTGA CGGGTCCCCT GACATCCCCC GCCTATCGCA CCGACCCAAG CAGCCTGTTC
TGCTATGAGC AGGATCAGGA TCGCGCCCGC GCGTTGCTGG CAGAGGCGGG CTTTGCCGAT
GGCTTCACGG CCACCGTCAT GGCCGCAACC GGTGAGCCGC CCACCGCATC GGCCGTGGCG
CAGGTGATCC AGTCGCAACT GTCTGAGGTC GGCATCACGC TTGAGATCGA GATGCAGGAG
CTGAGCGTCT ATATCGACCG CTGGCTTGCC GCGGATTTCG ACATGGCCGT GGCGCTGAAC
GGCGGGCGCG TGGACCCCTA TACGATGTAC AACCGCTACT GGACCCGCGA CGGGAACCTG
CAAGGCGTCG CCAACTACAT CGATGATACA CTCGACACGC TGATGAACGA TGGCCGGGCC
GAGACGGGCG AAGAGGCCCG CCGGGAGATC TATGCCAACT TCGAGTCCCA TCTGGCCGAA
ATGTCGCCCT GGGTCTGGCT GTTCACTGGC AACACCTACA CGGCTCAGAC CGACGCGGTC
TCCGGATTCG TTCCCACGCC CAACGGATCG CTCTTCGGCC TCGTGGATGT GACCCTGGCT
GAATAA
|
|---|
| Protein sequence | MTSIKTTARA LALISTALAA PLSAQTLDLA WSQDATGLDP HTQPGFATIR LLELMYEPLL
RLDANLELQP AIAQSWSFSD DGLQLTFQLD PAAMFHDGTS VTSADVRASF ERILDEETGA
ISRANYTSII NIETPDDATV VFELDRPDAP ILNGLATVNA AVLPASAIEA GTIATEVVGS
GPFMLDARTP NASATLTSFA DWHGGDVAYD TLSISVLPDE TALLGALRAG QADFALINDP
LVATLVPSTD GLTLNTAPTL SYYVLQLNAA REPMDSLPLR QAISCAINRQ DILDAALLGE
GEVTGPLTSP AYRTDPSSLF CYEQDQDRAR ALLAEAGFAD GFTATVMAAT GEPPTASAVA
QVIQSQLSEV GITLEIEMQE LSVYIDRWLA ADFDMAVALN GGRVDPYTMY NRYWTRDGNL
QGVANYIDDT LDTLMNDGRA ETGEEARREI YANFESHLAE MSPWVWLFTG NTYTAQTDAV
SGFVPTPNGS LFGLVDVTLA E
|
|---|
| |