| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3802 |
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| Symbol | |
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| ID | 3936282 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 3887453 |
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| End bp | 3888373 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637906180 |
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| Product | RpiR family transcriptional regulator |
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| Protein accession | YP_511744 |
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| Protein GI | 89056293 |
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| COG category | [K] Transcription |
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| COG ID | [COG1737] Transcriptional regulators |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0439738 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00014335 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAATTTTT TATTCACACA TGTCAAACTT TGTGTGGTAG ATTATTCCAA ACCGCCCAAA
TGCCATGGAA AACTCTTGTC CATACTCACC ATCATGCAAG CCCAACTGCC GACGCTGTCA
GCCGGAGATC GGCAGATCGC GGATACCATT CTGGGCGACC CCGACAGAAT GGCGCGCCTG
TCATCGGGTG AGTTGGCCCG TGCCGCAGGC CGCAGCCAAT CGTCGGTCGT GAAGTTTTGC
CAGAAGTTGG GGTTTTCGGG ATACCAAGAC CTGCGCCTGG CCGTCACCCG CGCTGCCGCG
ACACAGAAGG CCCCGAACGA TGCGGTCCAC AGCTCCATTG AGGTAAGCGA TGACGCGTCA
ATGACTGCGC AGAAGCTGTT GGCCAGCAAA ATCCATGCGT TGCAGGAGAC GCTCAGCATC
AATCCGGCCA AGAATCTGGA CGCGGCGCGG GATGCCTTGA ACGGGGCGGC GCGGGTGCAG
CTTTCGGGGG TCGGCGCGTC CTCCCTTGTG GCCCGGGACT TTGTCTACAA GCTGCAAAAG
CTTGGCATTT CAGTGCTGTT TGATGCTGAC AGCCACATCC AGATGGCCCA TTCAGCCACG
CTGACGCCCG ATGACGTGCT GGTGTCGCTG TCGCAATCGG GATTCAGTCT GGAGACTTTG
CGCATCGCGG AGGCCGCTGC CAAACGCGGC GCCACAATCA TCACCGTGAC CGGGCTTCAT
CCGAACCCCT TGGCGGATGT GGCGGATAAG GCGCTGTGCA CGGTGACCGA TGAAGATCAG
GTGAGATCGT CGGCCATCAC ATCCCGCGAT GCGCAGTTGA TCCTTTTGGA TCTTCTGTTT
CTGCGCCTGG TTCAGGTTAG GGACGGTGCG GTCGACCTGA TCGGGGGCGC CGCCGAAGCC
GTTGCGCCGC TGAAGGTATG A
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| Protein sequence | MNFLFTHVKL CVVDYSKPPK CHGKLLSILT IMQAQLPTLS AGDRQIADTI LGDPDRMARL
SSGELARAAG RSQSSVVKFC QKLGFSGYQD LRLAVTRAAA TQKAPNDAVH SSIEVSDDAS
MTAQKLLASK IHALQETLSI NPAKNLDAAR DALNGAARVQ LSGVGASSLV ARDFVYKLQK
LGISVLFDAD SHIQMAHSAT LTPDDVLVSL SQSGFSLETL RIAEAAAKRG ATIITVTGLH
PNPLADVADK ALCTVTDEDQ VRSSAITSRD AQLILLDLLF LRLVQVRDGA VDLIGGAAEA
VAPLKV
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