Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_3780 |
Symbol | |
ID | 3936260 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | - |
Start bp | 3864928 |
End bp | 3865455 |
Gene Length | 528 bp |
Protein Length | 175 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637906158 |
Product | tripartite ATP-independent periplasmic transporter DctQ |
Protein accession | YP_511722 |
Protein GI | 89056271 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG4665] TRAP-type mannitol/chloroaromatic compound transport system, small permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.642043 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGGGGAGA GCTATTTGAA ACTCGGGGAC CGCGCCGTCA CGGCATTGGC TTTTGCCTTG CTGGTGCTGA TGCTGGCCAT CGTGGCACAG GTGCTGTTCA GCGCGCTGGA TGTGAACCCG GTCGCGCGCT TCGGTACAGA TCTGCCGCTT CTGGGTGACG CGATCACGCT GAATTCGCTT CTGGACTTTC AATGGCACCT TCTGGTCATC ACCGGCCTCG TGCCTGCCGG TCTTGTTTGG CTGCTGGACC GCCATGTGCG CGTTGATTTC ATCTATCAGG CGCGCTCTAC ACGCGCGAAA GCCCGGATCG ACCTTCTTGG AAACCTCGTG TTCGCAGTCC CTTTTCTGGC GTTGGCCATA CCCGCGGCCA TCGACGTCCT GCGTCGGGCG TGGCGGTCTG ATGAAGGGTC CCGCAACGGG GGGCTCAATG ATCTTTGGTT GATCAAAGCG GTCTTACCAT TGGGCCTCAC CCTTCTGGCG CTGGCAATCG CGCTTGAGAC GATCCGCCTG ATCCGGTCCG CGAGATGA
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Protein sequence | MGESYLKLGD RAVTALAFAL LVLMLAIVAQ VLFSALDVNP VARFGTDLPL LGDAITLNSL LDFQWHLLVI TGLVPAGLVW LLDRHVRVDF IYQARSTRAK ARIDLLGNLV FAVPFLALAI PAAIDVLRRA WRSDEGSRNG GLNDLWLIKA VLPLGLTLLA LAIALETIRL IRSAR
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