Gene Jann_3780 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_3780 
Symbol 
ID3936260 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp3864928 
End bp3865455 
Gene Length528 bp 
Protein Length175 aa 
Translation table11 
GC content60% 
IMG OID637906158 
Producttripartite ATP-independent periplasmic transporter DctQ 
Protein accessionYP_511722 
Protein GI89056271 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG4665] TRAP-type mannitol/chloroaromatic compound transport system, small permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.642043 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGGGGAGA GCTATTTGAA ACTCGGGGAC CGCGCCGTCA CGGCATTGGC TTTTGCCTTG 
CTGGTGCTGA TGCTGGCCAT CGTGGCACAG GTGCTGTTCA GCGCGCTGGA TGTGAACCCG
GTCGCGCGCT TCGGTACAGA TCTGCCGCTT CTGGGTGACG CGATCACGCT GAATTCGCTT
CTGGACTTTC AATGGCACCT TCTGGTCATC ACCGGCCTCG TGCCTGCCGG TCTTGTTTGG
CTGCTGGACC GCCATGTGCG CGTTGATTTC ATCTATCAGG CGCGCTCTAC ACGCGCGAAA
GCCCGGATCG ACCTTCTTGG AAACCTCGTG TTCGCAGTCC CTTTTCTGGC GTTGGCCATA
CCCGCGGCCA TCGACGTCCT GCGTCGGGCG TGGCGGTCTG ATGAAGGGTC CCGCAACGGG
GGGCTCAATG ATCTTTGGTT GATCAAAGCG GTCTTACCAT TGGGCCTCAC CCTTCTGGCG
CTGGCAATCG CGCTTGAGAC GATCCGCCTG ATCCGGTCCG CGAGATGA
 
Protein sequence
MGESYLKLGD RAVTALAFAL LVLMLAIVAQ VLFSALDVNP VARFGTDLPL LGDAITLNSL 
LDFQWHLLVI TGLVPAGLVW LLDRHVRVDF IYQARSTRAK ARIDLLGNLV FAVPFLALAI
PAAIDVLRRA WRSDEGSRNG GLNDLWLIKA VLPLGLTLLA LAIALETIRL IRSAR