| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3400 |
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| Symbol | |
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| ID | 3935873 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 3451851 |
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| End bp | 3452747 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637905773 |
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| Product | RNA polymerase factor sigma-32 |
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| Protein accession | YP_511342 |
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| Protein GI | 89055891 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.874849 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAATT ATGCAAATCT TCCCGCACCT TCGCCCGAGG GCGGCCTGAA CCGTTACCTG
CAGGAAATCC GCAAGTTCCC GATGCTGGAG CCGGAGGAGG AGTACATGCT CGCCAAGGCC
TGGGCCGAAA AGGAAGACAC CGAAGCCGCC CACAAGATGG TGACCTCGCA CCTGCGCCTC
GCCGCCAAGA TCGCCATGGG CTATCGCGGC TATGGCCTGC CCCAGGCCGA AGTGATCTCG
GAAGCCAATG TAGGCCTCAT GCAGGCCGTC AAGAAGTTTG ATCCCGAAAA GGGCTTCCGC
CTGGCGACCT ATGCGATGTG GTGGATCCGG GCCGCGATCC AGGAATATGT CCTGCGCTCG
TGGTCGATGG TGAAGCTCGG CACGACGTCT GCGCAAAAGA AGCTCTTCTT CAACCTGCGC
AAGGCCAAGG CCCGCATCGG CGCGTTGGAG GAAGGCGACC TGCGCCCCGA AAACGTCGAA
CGGATTGCCA ATGATCTGGG CGTGACGGAG GCGGAAGTCG TCTCCATGAA CCGGCGCATG
TCGGGCGGTG ACGCGTCCCT GAACGCCACG GTCGGCTCCG AGGATGAAGG CTCTGCCCAA
TGGCAGGACT GGCTGGAAGA TGAAGATGCC GATCAGGCGA CAGATTACGC CGAGCGGGAC
GAATTCCAAA GCCGGATGGC CCTGATGGCC GAGGCGATGG AAGTGCTCAA TGACCGGGAG
AAGGACATTC TGACCCAGCG CCGCCTGCAG GAGAAGGCCG TCACGTTGGA AGACCTCTCG
GGCGTCTATA ATGTCAGCCG CGAGCGGGTC CGCCAGATCG AGGTGCGCGC GTTCGAGAAG
CTGCAAAAGC GGATGCGGGA ATTGGCGCGC CAGCAAGGTA TGCTCGCTTC CGCCTAA
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| Protein sequence | MANYANLPAP SPEGGLNRYL QEIRKFPMLE PEEEYMLAKA WAEKEDTEAA HKMVTSHLRL
AAKIAMGYRG YGLPQAEVIS EANVGLMQAV KKFDPEKGFR LATYAMWWIR AAIQEYVLRS
WSMVKLGTTS AQKKLFFNLR KAKARIGALE EGDLRPENVE RIANDLGVTE AEVVSMNRRM
SGGDASLNAT VGSEDEGSAQ WQDWLEDEDA DQATDYAERD EFQSRMALMA EAMEVLNDRE
KDILTQRRLQ EKAVTLEDLS GVYNVSRERV RQIEVRAFEK LQKRMRELAR QQGMLASA
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