Gene Jann_3308 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_3308 
Symbol 
ID3935781 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp3362689 
End bp3363207 
Gene Length519 bp 
Protein Length172 aa 
Translation table11 
GC content61% 
IMG OID637905681 
ProductCarD family transcriptional regulator 
Protein accessionYP_511250 
Protein GI89055799 
COG category[K] Transcription 
COG ID[COG1329] Transcriptional regulators, similar to M. xanthus CarD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000178714 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0560372 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCAAAG CCCGTAAAAC GCTCGACTTC AGCCCCAATG ATTACGTTGT CTACCCCGCC 
CATGGCGTGG GTCAGATCAT CACGATCGAG GAGCAGGAAG TCGCGGGGCT AAACCTGGAG
CTGTTCGTGA TCTCGTTCGA GAAGGACAAG ATGACGCTGC GCGTTCCGAC CGCCAAGGCG
ACCGAAGTGG GCATGCGTCC GCTGAGTGAT CCGACGGTTG TGTCCAAGGC GCTGGACACG
CTGAAAGGCA AGGCGCGCGT GAAGCGGGCG ATGTGGTCGC GCCGCGCACA GGAATATGAG
CAAAAGATCA ACTCAGGTGA TCTGATCTCC ATCGCAGAGG TCGTGCGCGA CCTGCACCGC
GCCGACGATC AGCGGGAACA GAGCTATTCG GAACGGCAGC TGTATGAAGC CGCTCTGGAG
CGTCTGACCC GCGAATTGGC CGTCGTCAAA GGCATCGACG AGGCGGGTGC CGGCGCACAA
TTGGTCGACG TTCTGTCCAA GCGCGTGGCC GCCGCCTAA
 
Protein sequence
MTKARKTLDF SPNDYVVYPA HGVGQIITIE EQEVAGLNLE LFVISFEKDK MTLRVPTAKA 
TEVGMRPLSD PTVVSKALDT LKGKARVKRA MWSRRAQEYE QKINSGDLIS IAEVVRDLHR
ADDQREQSYS ERQLYEAALE RLTRELAVVK GIDEAGAGAQ LVDVLSKRVA AA