| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3257 |
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| Symbol | |
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| ID | 3935729 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 3307581 |
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| End bp | 3308969 |
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| Gene Length | 1389 bp |
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| Protein Length | 462 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637905629 |
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| Product | Type I secretion outer membrane protein, TolC |
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| Protein accession | YP_511199 |
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| Protein GI | 89055748 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.30122 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.885594 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGTAG GGCTTCTGAA ACGTGTACGC GGCGCACTTA TGGTGACGAC GCTTGCGGCG
ATCACGGCGC TGCCTGTGCA GGCCGACACC CTCCGGCAGG TCATGGTGGA TGCCTACCGC
CACTCCGACC TTCTGGAACA GAACCGCTAT CTATTGCGCA TCCAGGACGA GGGCGTGGCC
CAGGCCGTCG CACAGCTTCG TCCCGTGTTC AGCTTCGTTG CGTCAATTGA ACGGGACATC
ATCAACGATA CGTCGAATGC GTCTGCCTCT TTGGTGGCGG AATATCTGCT TTATGACGGC
GGCGCGCGCC GCTTCGCGCT GGAGGCGGCG GAAGAAACCG TGCTGGCCGC GCGTCAGCAG
CTTGTGTCGC TGGAACAGCA GGTGCTGTTC GATGCCGTGA CCGCCTATAT GAACGTGTGG
CGGGACATCC AGATTGTGGG CGTGCGCGAA CGCAACGTGC GCGTTATCAC GCAACAGCTT
CGCGCGGCCC GGGACCGGTT TGAGGTTGGC GAAGACACCC GGACCGATGT GGCCCAGGCC
GAGGCGCAAT TGGCCACCGC CCGCTCGCAA CTGGCCGGTG CGCAGGGCGC GCTCGATATC
AGCCGGGAGC TGTTCAACTT GGCCATCGGA CGTTATCCCA ACGGCCTGTC CGGCCCCGGA
GCCGTGCCCA ATGTGCCCCG GACCGAGGTT GCGGCCCAAA ACCTCGCACG CCAACAGCAT
CCCGCGATCC GTGCCCTGCA ACACGAAGTT ACCGCGGCGG AATTGGGGAT CGAGCAGGCC
CGGGCCGGTT TGCGCCCCCA GCTTAGCCTG GACGGTCGCG CGACAGAGGT GTTCGAGAAC
ACCGCCAACC CCTTTGCGGA GGGCAGCTCT GCCACCATCG GCCTGACGCT GACCCAGCCG
CTCTATCGGG GTGGGCAGCT TCTGTCGCTG GAGCGGCAAT CCCGCGCCCA GGCCGCCGCC
GTGCGGTTCT CCCTGAGCCA GCAGGTGCGC ATCAACTTGC AGGGTGTCGG CAACGCCTGG
GCGCTGATGC GGATCGCATC GGCCCAGATT CAGGCGGCAG ATCAACGGAT TGCAGCAGCA
GAGCTGGCCT TTGCCGGGGT CCAGGAAGAG GCGTCGCTTG GCGCGCGCAC CACCCTTGAT
GTGCTGGATG CGGAGCAAGA CGTTCTGGAC GCGCGGATCA GCCGGATTGA GGCGCAGACG
GATCTTTACA CCGCCAGCTA TCAATTGCTG TCGGCCTCCG GATTGCTGAC GGTGGAGGCA
CTTCACCTCA ACGTGCCGCA ATACGATCCC GCCGCCTACG CCAACATGTT CTCGGGCGCG
CCGTCGCTGG TGAACAGCCC GCGTGGCGCG CAGCTTGATT CTGTGCTGGA GCGCTTGGGC
CGCGACTAA
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| Protein sequence | MAVGLLKRVR GALMVTTLAA ITALPVQADT LRQVMVDAYR HSDLLEQNRY LLRIQDEGVA
QAVAQLRPVF SFVASIERDI INDTSNASAS LVAEYLLYDG GARRFALEAA EETVLAARQQ
LVSLEQQVLF DAVTAYMNVW RDIQIVGVRE RNVRVITQQL RAARDRFEVG EDTRTDVAQA
EAQLATARSQ LAGAQGALDI SRELFNLAIG RYPNGLSGPG AVPNVPRTEV AAQNLARQQH
PAIRALQHEV TAAELGIEQA RAGLRPQLSL DGRATEVFEN TANPFAEGSS ATIGLTLTQP
LYRGGQLLSL ERQSRAQAAA VRFSLSQQVR INLQGVGNAW ALMRIASAQI QAADQRIAAA
ELAFAGVQEE ASLGARTTLD VLDAEQDVLD ARISRIEAQT DLYTASYQLL SASGLLTVEA
LHLNVPQYDP AAYANMFSGA PSLVNSPRGA QLDSVLERLG RD
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