| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3035 |
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| Symbol | |
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| ID | 3935506 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 3057900 |
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| End bp | 3061373 |
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| Gene Length | 3474 bp |
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| Protein Length | 1157 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637905406 |
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| Product | ImcF-related |
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| Protein accession | YP_510977 |
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| Protein GI | 89055526 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.393455 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCCCC TTGGCATGTG GACCACGATC CGCTCAAACG TCCAGTCCTA CGCCTCTGTG
CTTGGACCGC GCTTTGCGGC GCTGATCTGG GTCGGCGCGA TCTGCGCCGT GATCTGGATC
TTCGGCCCCC GTCTGCCCTG GGGCGACACG CGCCCGCTGG AGCCCGCCCG CATCCGTCTG
ATCCTGATTG CAGTGATCCT TGGTCTCTGG CTGATTTATG CGCTGATTTC CTGGCTGCGC
GGACGCAAAC GCGCCGCGTC TGAGGACGCA GCCATCACCG AAAGCCCCGA GGCGGTCGCC
GCCGGCGAGG CCCGGGAAGA GATTGCGGAA CTCCGCTCCC GTCTGCGCGA TGCCCTCAAG
ATGATGCGCA AACACGCGCG GCGGCGGTTT GGCTATGCCT ATGACTTTCC ATGGTATTTG
ATGATGGGCG CGCCCGGGGC GGGCAAGACG ACGCTGCTGC AACGCTCGGG CCTGAAGTTC
CCCCTCGGCG ATGCGTTGCG GGCAGAGCCG GTGCAGGGCG TGGGCGGGAC GCGCAATTGC
AACTGGTGGT TCACCGACCG CGCCATCCTG ATCGATACCG CCGGGCGCTA TACCACGCAG
GAAACCGGAC AGGCCCGCGA CCGCGAAGGG TTTTTGGGAT TTTTATCGAT GCTGCGCCGC
ACCCGTCGAC AGCAGCCGAT CAACGGCATC GTGCTGACCC TGTCGCTGAC GGACCTTCTG
GCCCAGGACC CCGAAGATCG CCTGCGCGAC ATCCGCGCCA TCCGCCAGCG CCTGACCGAG
ACGGAAGAGG CGCTTGGCGC GCGCATTCCG GTTTATATGG TGTTGACCAA GGCCGATCGT
CTGACCGGGT TTTCGCGCTT TTTCGATAGT CTCGGCCAGC AGGCGCGCAA GCAAGTCTGG
GGCATCACCT TTCCATATGA GGAGGCGCAG ACAAAAGGCA CCCTCCCCGA CATTTTCAGC
CGCGAATATC AGGGGCTTCT GGCACGCTTG AATGCGATGC TGATCGAGCG GTTTCAGCAG
GAAACCGACA TCGACCAGCG CGGGCGTATC TTCCGGTTTC CCGCCCAGGT CAGCGCGCTC
CATGATGCCC TGCGCGAGAT TGTGGAAGAG CTGTCATCGG GGGCCGCAAA TGTGTCCGAG
CCGTTGTTGC GCGGCATCTA CTTTGCCTCC GCCACGCAGG AAAACGCAGG TCCCGTCGCC
GCCATCCCAG GCGTGCCTCA AACCGCCGCC GCGATGAACC GCACCTATTT CGTGGAGCGG
TTATTCCGCG AAGTGATCCT GGGAGAGGCC GCGCTGGTGG GCCGCGACGC CCGCGTCAGC
CGCCGTCGCC GCATTGCGAC CGGCCTGGCC TACGGGGCCG CGGCATCCTT GGCACTGTTC
CTGCTTGGCA GCTGGACCCT TGGCTTCAGC ACCAACCGGC AGGCGTTGGC CGCCATTGAT
ACTGGTCTCG TGAATTACGA AGATCTGGCC GACACGATCC CCGTGCGCGA CGTGGCCGAC
GCCGATTTCC TGCGCGTCCT GCCTGCCCTT GACCGTCTGG CGCGGACGCC GGACGCCTTT
CACGTGGCAG AGGGGCCGGG CCTGACCATG CGCCGCGCCA GCTTTGGCAT GGACCGCTCC
GCCCGGATCG AGTCTGGCCA CGCGGAGGCC TATTCCGAGG CGCTCGGCGC GTTCCTGCTG
CCCCGCTACA TGGTCGCCCT GCAAAACGTG CTGCAAGACG GCGAAACCGA CGAAGCCACT
GCGTTCGAGA CCTTGAAGCA TTACCTTTCG CTCGCCGGGC TGGGGCCGAT TGATCGCGAC
GGTCTTCTGG CCCAATCGGA ACGTCTGTTT GACCAGCTTT ACCCCGGCTC CGGGCGCGGG
CCCACGCGCG ACGCCCTGCA AGCGCATATG GTCGCCATGC TGGATCGCGG CACCCTTCCG
GTGCTGGAAA TTGACGAGAT GCTGGTGGAA GACACCCGCG CCCGCATCGC CGAACGCAGC
CCCGCCCAAC GTGTGCTGGA TCTGCTGGCC GACCGCCCCG CTGCCCGCGC CATTCCCGAC
TGGACGCTCA CCTCTGCCGC CGGGCCCCGG GCGCGTCAGG TGTTTGTGGG CGACGGCACC
GTGATCGACG GGCTCTATAC CCGCGCGGGC TACCGTGAGG TTCTTCTGCC CCGCATCGGG
GCCCTGTCCG AAGTCGCTGT GCATGAGGAT TGGGTCCGCG GACCCGGCAC GCCCACCCGT
GCCACGCCGT CCGATATCGC CGCCGATGCG GTGACGCTCT ACTATGCCGC CTTTGAAAGC
CATTGGCGCG CGGCGCTCAG TGGATTGTCC ATCGTGCCGA CCGAGGCCCT GTCCGGTGCG
GCGGATCTTG CCCTGACCCT CGCGTCCGAG GCAGATCCCC TCAGCCGTCT GGCCCGCGAC
ATCGCCGCGC GCACCGACCT GATAACCCCG TCGCCCATCG ATGATTTCGA CGCCTCGGCC
CTGCCCTTCG ATCCGGCCAC TGCCCCGGAC CCCTACGGCC CCCTGCGCCG GTCACTGGAG
CCCGAGGAGG ACGCCGAAGG CAACACAACG GACGCCCTTA CTCCGCTGGT CCCCCTCTAT
GACGAGATCT ACCAGCAGCT CACCCGGCTG GATTCGCCTG ATCCCGCCGC CGCCGCAGCA
CTGGCATCTG AGACCGCCTT GCGGGATGCC GCGCAATCGC TGGTGGCCGA GGGGCGGCAG
CTGGATGCCC CCATCGACGC CTTCGTCGTC ACCATCGCCG CCCGTGTATC CGAGGCCGCC
GTGGGTCAGG CCCGCGCCGC CGCCGATGCG CTGTGGCAGG CCGAGGGCTA CCCGATGTGT
GACCGTGCCA TCTCGGACCG CTATCCCTTC AGCCCCGCCG CCTCTGCCGA TGTGACGCTG
ACTGATTTCA CCGCTGTCTT CGGCCCAAAT GGCCTCTTTG CCACCTTCTT CGCCGAGCAT
CTCGCTGACC TCGTCAACAC CACCGCCGAT CCCTGGGTCT GGTCCGGGGG TCTTGCGCCC
GATGGCGACA TCCAGACCGC CCTGCACCAG TTTCAGCGCG CCGCCCAGAT CCGCGCCGCC
TTCTTCCCCA ATGGCGTGGC CGAACCGCGG GTGGAACTGC GCGTGGACCT TATCGCTCTG
GAACAGGGCG CGCGGGTGGC GCTGTTTGAA ATCGGTGATC GCAGGTCAGC CCACCGCGAA
GATCTGTCCG ATGAAGAACG CCTGATCTGG CCGCCCGAGG ATTCTGACAT CGCCCGCGTC
ATGCTGCTGC CCGGGGACCG GGAAACCGCC CCCACGGAAC GCGGCCCCTG GGCCCCCTTC
CGCCTGATCG ACCGCGCCGA AGTGACCCCC GGCACCGACA ACGAATTTCA GGCGCGCTTC
ACCGTCGATG GCCGTGCGGT GACATTCAAC CTGACCTCGG GCAGCGTGAA CAACCCGTTC
AACCTGCCCG CGTTGACGGC GTTCCGCTGT CCCCAATCTC TCGCGGCCCA ATGA
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| Protein sequence | MNPLGMWTTI RSNVQSYASV LGPRFAALIW VGAICAVIWI FGPRLPWGDT RPLEPARIRL
ILIAVILGLW LIYALISWLR GRKRAASEDA AITESPEAVA AGEAREEIAE LRSRLRDALK
MMRKHARRRF GYAYDFPWYL MMGAPGAGKT TLLQRSGLKF PLGDALRAEP VQGVGGTRNC
NWWFTDRAIL IDTAGRYTTQ ETGQARDREG FLGFLSMLRR TRRQQPINGI VLTLSLTDLL
AQDPEDRLRD IRAIRQRLTE TEEALGARIP VYMVLTKADR LTGFSRFFDS LGQQARKQVW
GITFPYEEAQ TKGTLPDIFS REYQGLLARL NAMLIERFQQ ETDIDQRGRI FRFPAQVSAL
HDALREIVEE LSSGAANVSE PLLRGIYFAS ATQENAGPVA AIPGVPQTAA AMNRTYFVER
LFREVILGEA ALVGRDARVS RRRRIATGLA YGAAASLALF LLGSWTLGFS TNRQALAAID
TGLVNYEDLA DTIPVRDVAD ADFLRVLPAL DRLARTPDAF HVAEGPGLTM RRASFGMDRS
ARIESGHAEA YSEALGAFLL PRYMVALQNV LQDGETDEAT AFETLKHYLS LAGLGPIDRD
GLLAQSERLF DQLYPGSGRG PTRDALQAHM VAMLDRGTLP VLEIDEMLVE DTRARIAERS
PAQRVLDLLA DRPAARAIPD WTLTSAAGPR ARQVFVGDGT VIDGLYTRAG YREVLLPRIG
ALSEVAVHED WVRGPGTPTR ATPSDIAADA VTLYYAAFES HWRAALSGLS IVPTEALSGA
ADLALTLASE ADPLSRLARD IAARTDLITP SPIDDFDASA LPFDPATAPD PYGPLRRSLE
PEEDAEGNTT DALTPLVPLY DEIYQQLTRL DSPDPAAAAA LASETALRDA AQSLVAEGRQ
LDAPIDAFVV TIAARVSEAA VGQARAAADA LWQAEGYPMC DRAISDRYPF SPAASADVTL
TDFTAVFGPN GLFATFFAEH LADLVNTTAD PWVWSGGLAP DGDIQTALHQ FQRAAQIRAA
FFPNGVAEPR VELRVDLIAL EQGARVALFE IGDRRSAHRE DLSDEERLIW PPEDSDIARV
MLLPGDRETA PTERGPWAPF RLIDRAEVTP GTDNEFQARF TVDGRAVTFN LTSGSVNNPF
NLPALTAFRC PQSLAAQ
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