| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3034 |
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| Symbol | |
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| ID | 3935505 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 3056440 |
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| End bp | 3057903 |
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| Gene Length | 1464 bp |
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| Protein Length | 487 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637905405 |
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| Product | OmpA/MotB |
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| Protein accession | YP_510976 |
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| Protein GI | 89055525 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins
[COG3455] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family
[TIGR03350] type VI secretion system OmpA/MotB family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.047877 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCGAC CGGACCACGA TGACGCAGAG GACGCCCCGC GCATCATCAT GCCGACACCC
GGTGGCAAAC GCCCGGAGGT GGAGCCTGAA GCAGCCCCCG GCCCCGCTGA CCCGCCCGCG
CCCGACCCTG CGCCGTCGGT CTCGGACATC CTGTCCGGGT TCCGCTTCGC GGGCGGCGAT
CTGCCGGTCA TGGTGGCGCA GGCAGCACCC CTTCTGAACC TCGCCCATGC GCTCCGCACC
GGGCAGACCC CGCCCGCCAT CGGTGACCTG CGCCGCTCCC TCACCGGGGC CGCGCGCACC
TATGAAGCCG CGCTTGCCAC GGCGGGCATC GTTCCCGATC AGGCCCGCGC CGCCCATTAC
GTCGTCTGTG CCACGCTCGA TGATGTGATC CGCAACACCG ACTGGGGCGC GGAATGGGCC
GTTGAAGGGC TGGTGTCCAC CTTCCACCAT GACGTCCACG GCGGCGACAA GGTCTTTGCC
CTCCTGACCC ATTTTCAACG CACGCCGCGC GCGAACCGCG ACCTGTTGCT ACTGATCTAC
CTCTGCCTGT CGCTGGGGTT TGAAGGCCGC GCCCGTGTCT CATCCCGGGG CGCGGCGGAA
CTGGCGTTGG TGCGCGAAAA CCTGTTCCGC ACCCTGCGCA CCGAATTTGA CATCGTGGAA
CGGGATCTGT CTCCGCTCTG GCAGGGCGAA GACGCCGCCC ACTCCCCGGT GCGGCGCAGC
GTGGCGTTCT GGTCGATCAC CGGGGTGATC CTGCTGGCGC TCATTGGCGT ATTCCTCGTC
TATACCCTGC TGCTGAACCG CGCGGCCGAG GCGACGCTGG CGCGCCTCGC CACACTCCCC
CCCGGGGCGC CGCCGTCCCT CGCCCTGCCG GACCCGCCCG CACCTGATCC GGTGGTGGAG
CCGCCCGCGC CTGCTGACCC GCCCGTTGTG ACGCCCGAAG ACCCGCCGCA GGTGCCGCCC
ATCGACACCT TCATCGCCTT CCTCCAGCCT GAGGTCGACG ACGGCCTCGT GCGGCTCTAC
CGCGAAGGGG ACGCGGTGCT GGTGCGGGTT GCCAATGCGG GCGCGTTCGG CTCCGGCTCC
GCCGAGATTG AGGATGACTT TATTGATGTC TTCGATCGCA TCGGGCAGGC GCTGGCGGCG
GAAGATTTCG CCGTCACCGT TCTGGGCCAT ACCGACAATG TCGCCATCCG CACCGCGCCC
TTTCCGAACA ATTACTTCCT GTCGCGCGCC CGCGCCAACG CCGTGCGCGA CGTGCTTCTG
CAATACGTGG ATCCGGTGCG TGTGGACATC GAAGGTCAGG GCCCCGACCG GCCCATCGCC
TCCAACATCA CGCCCGCCGG GCAAGAGGCC AATCGCCGGA CCGAGATCCT TGTGCGCGAG
CCCGGGGACC GGGTCCCCGA CAGCCTGCTG ACCCAGGGCG TGCAACCCGC CGAAGAGGCA
GAGCCACAGG AGCAGACGCC ATGA
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| Protein sequence | MSRPDHDDAE DAPRIIMPTP GGKRPEVEPE AAPGPADPPA PDPAPSVSDI LSGFRFAGGD
LPVMVAQAAP LLNLAHALRT GQTPPAIGDL RRSLTGAART YEAALATAGI VPDQARAAHY
VVCATLDDVI RNTDWGAEWA VEGLVSTFHH DVHGGDKVFA LLTHFQRTPR ANRDLLLLIY
LCLSLGFEGR ARVSSRGAAE LALVRENLFR TLRTEFDIVE RDLSPLWQGE DAAHSPVRRS
VAFWSITGVI LLALIGVFLV YTLLLNRAAE ATLARLATLP PGAPPSLALP DPPAPDPVVE
PPAPADPPVV TPEDPPQVPP IDTFIAFLQP EVDDGLVRLY REGDAVLVRV ANAGAFGSGS
AEIEDDFIDV FDRIGQALAA EDFAVTVLGH TDNVAIRTAP FPNNYFLSRA RANAVRDVLL
QYVDPVRVDI EGQGPDRPIA SNITPAGQEA NRRTEILVRE PGDRVPDSLL TQGVQPAEEA
EPQEQTP
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