| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3030 |
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| Symbol | |
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| ID | 3935501 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 3051107 |
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| End bp | 3052885 |
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| Gene Length | 1779 bp |
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| Protein Length | 592 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637905401 |
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| Product | hypothetical protein |
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| Protein accession | YP_510972 |
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| Protein GI | 89055521 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.104636 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCAACC GCTTCCTGGA ATTCTACAAT ACTGAACTGG CCGCCCTGCG CCACCGCGCC
ACGCGCTTTG CCGAAGCGCA TCCCAAGATC GCCGGGCGGC TGCGTTTGGC CTCCGATGTG
GCCGACGACC CGAACGTGGA GCGTCTGATC CAATCCTTCG CCTATACCGC CGCGCGGGTG
CATCAGAAGA TCGACGACAG CCTGCCGGAG CTGACCGACG GCCTGCTGGA AACGCTCTAC
CCGCACTACC TCGCCCCCCT GCCTTCGCTC ACCATCCTTG GCCTGTCGCC TGATCGCGGC
ATGGACGGCG CGCAAACGGT GCCCCGCGGG ACAGAGGTGA CGTCGCAGGT TATCGACGGG
GACCGTGTGC GGTTCACGAC GACGCAGGAT GTGCCGCTCT CGCCTGTGAA ACTGACCGAA
ATTCGCCTCA GCGCGCGCCC GTTCGAGGCC CCGCCTGCCC CTACTGCGGC CTCTGCCACC
TGCCTGCGGC TCAGCCTTGC GCCCACGGGC CGCGTGTCAC TCCGCGACAT GGACCTGAAG
CGTCTGCGTC TGTTTCTGTC GGGACCGACG ACCGAAGCGC AGGTCCTCGC CCAACTGATG
CTGCAATCGC TGACCGGCGT CACCATGGCC GCCCATGCCG GGGATGAAAA TGCCCGCCGC
ATGCCGACCA GCGCCCTGCG GCCCATTGCG TTCGATGACG ACACATCCCT GATCCCCTGG
CCTGCGGGCA GCTTCACCGG CTACCGGACC CTGACCGAAT TCGCCGCCCT GCCCGAGAAG
TTTCTGTTCT TCGATCTGCA TCTTGACCGG GTGGTGGAAA CGGACCGGCT GGACCTTTAC
CTCTACTTCG ACATGCCGCC GGGCGACGTG CTGAAATCCG TGGGCGCGCA TTCCGTGACG
CTGCACGCGA CGCCCGCCGT CAACCTCTTC GCCAGTCAGG CCGAACCCAT TGCGCTTGAT
GGCACACGCT CGGCCTATCC GCTGGCCGCC GATGCGCGCC GCCCGCGCAC CCGCGCCGTG
CATTCGGTGC GCCGGGTCAC TGTCGCGAAC GGGGACGGCA CCTCTGCCAC CAGTGCACCG
ATTTTCCACC GGCTGACCGA CCACCAGCGC GGCGGGACCT TCTGGCACCT GCGCCGCCAT
TCCGAAGATC AGGGCCACGC CCCGGGGGCC ACATCGCTGG CCTTCGTGGA TGCCCGTAAC
CAGCCCGATG CGCCCAACGA CAGCACGGCC AGCATTGACA TCCTGACCAC CAACGCCAAC
CTGCCACGCA AGCTGCCCTT TGGTGGCGGT CAACCGGCGC TGTCGCTCGC CTCTCCGATT
GACCATGTGT CGGGCGTCAC GTGCCTGCGC GCGCCCACCC CGCCGCGGGC CCCCGGGGCC
GATGCCGACC GCGCCTGGCA ATTGATGTCG CATCTGTCGC TCAACCACCT GTCCCTGACC
GACAGCGGCG CGCCTGCCCT GCGCGATATC CTGCGCCTGT ATGACCCCGG CGATGGGCCC
GAGATGGCGC AGTTGATCGA CGCCATTGAT GACGTGTCCA CCCGGACTGG CCTCGCGCGG
ATCGACGGCG TCACCGTGAC CGGCACCGAT ATCACGCTGG CCTTTGATGA CAGCCGCATC
GCGCCCGGTC AGGCGGTGGT CTTCGCTTCT GTGCTGGACC GGTTCTTCGG CTGCTACACG
ACGCTCAACA CCTTCACACG GCTGTCGGTG CGGATGCGCG ACCGGACCGA TTGGCTGGCC
AAGTTTGCTG CGCGCGCGGG GGAGGCGGCG CTGATATGA
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| Protein sequence | MTNRFLEFYN TELAALRHRA TRFAEAHPKI AGRLRLASDV ADDPNVERLI QSFAYTAARV
HQKIDDSLPE LTDGLLETLY PHYLAPLPSL TILGLSPDRG MDGAQTVPRG TEVTSQVIDG
DRVRFTTTQD VPLSPVKLTE IRLSARPFEA PPAPTAASAT CLRLSLAPTG RVSLRDMDLK
RLRLFLSGPT TEAQVLAQLM LQSLTGVTMA AHAGDENARR MPTSALRPIA FDDDTSLIPW
PAGSFTGYRT LTEFAALPEK FLFFDLHLDR VVETDRLDLY LYFDMPPGDV LKSVGAHSVT
LHATPAVNLF ASQAEPIALD GTRSAYPLAA DARRPRTRAV HSVRRVTVAN GDGTSATSAP
IFHRLTDHQR GGTFWHLRRH SEDQGHAPGA TSLAFVDARN QPDAPNDSTA SIDILTTNAN
LPRKLPFGGG QPALSLASPI DHVSGVTCLR APTPPRAPGA DADRAWQLMS HLSLNHLSLT
DSGAPALRDI LRLYDPGDGP EMAQLIDAID DVSTRTGLAR IDGVTVTGTD ITLAFDDSRI
APGQAVVFAS VLDRFFGCYT TLNTFTRLSV RMRDRTDWLA KFAARAGEAA LI
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