Gene Jann_2903 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_2903 
Symbol 
ID3935371 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp2923282 
End bp2924148 
Gene Length867 bp 
Protein Length288 aa 
Translation table11 
GC content60% 
IMG OID637905272 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_510845 
Protein GI89055394 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1175] ABC-type sugar transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.199825 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGACCC AGCATTCCCG ATCAGCGGCG CGGATCATGA TGGCCCCGGC GGTCTTCCTG 
CTTCTCGTCT GGATGCTCGT GCCCCTGTGC ATGACGCTGT GGTTCTCGGT CCGCGATTTC
CGCCCCCTGC GCGGCGGCGA CAATGGCTTC GTCGGGATGG AGAATTTCAT CCGCTTCGTG
TCATCCAGTT CATTCTGGCC GGCTGTCATG ACCACGCTCA TCATCGTGGG CGGTGTTCTT
TTGATCTCCA TCTGCCTTGG CGTTCTGCTG GCGATCCTTC TGGATCAGCC GATGTGGGGT
CAGGGGGTCG TGCGGATCCT GGTGATCGCG CCCTTCTTCG TCATGCCAAC CGTGTCGGCG
CTGGTGTGGA AAAACATGTT CATGGACCCG GTCAACGGCG TCTTCAGCTA CATCTGGCGA
TTTTTTGGAG CCGACCCGGT GGTCTGGTTA TCGGAAATGC CAGTCTTCTC CATCGTGATG
ATCGTCTCCT GGCAATGGCT GCCGTTTGCG ACGCTGATCC TTCTGACCGC GATCCAGTCG
CTGGACAGTG AACAGCTGGA AGCGGCCGAG ATGGACGGGG CCGGGCCGTT TTCCCGCTTT
GGCTTCATCA CGCTCCCGCA CCTGAGCCGC GCGATCACCA TCGTGATCCT GATCCAGACG
ATCTTCCTGC TGGCCGTCTT CGCCGAAATC TTCGTGACCA CCGGCGGCGC GTTCGGCACC
CGGACCCTGA CCTATCTGAT CTACCAGCGC GTACTAGAAA GCCAGAACGT CGGCCTGGGA
TCTGCGGGCG GCGTCTATGC CATCATTCTT GCCAATATCG TTGCCATCTT CCTGATGCGC
ATCGTCGGCA AAAACCTGGA TAAGTGA
 
Protein sequence
MATQHSRSAA RIMMAPAVFL LLVWMLVPLC MTLWFSVRDF RPLRGGDNGF VGMENFIRFV 
SSSSFWPAVM TTLIIVGGVL LISICLGVLL AILLDQPMWG QGVVRILVIA PFFVMPTVSA
LVWKNMFMDP VNGVFSYIWR FFGADPVVWL SEMPVFSIVM IVSWQWLPFA TLILLTAIQS
LDSEQLEAAE MDGAGPFSRF GFITLPHLSR AITIVILIQT IFLLAVFAEI FVTTGGAFGT
RTLTYLIYQR VLESQNVGLG SAGGVYAIIL ANIVAIFLMR IVGKNLDK