| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2813 |
|---|
| Symbol | |
|---|
| ID | 3935279 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 2828122 |
|---|
| End bp | 2829336 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637905180 |
|---|
| Product | acyl-CoA dehydrogenase-like |
|---|
| Protein accession | YP_510755 |
|---|
| Protein GI | 89055304 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.207157 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGACG GTCAGACACG CCACACCGGT CCTTCGCTTG CGCCTTTCGA CTGGGCCGAC
CCTTTCCATC TGGCAGATCA GCTGTCTGAC GAAGAACGTA TGATCGCCGA AAGCGCGCGC
GCCTACGCCC AAGACAAGCT GCTGCCCCGC GTCACGGACG CGTATCTGGA GGAGCATGTG
ACACCGGACG TCTTTGCCGA AATGGGCGAG ATGGGATTGT TGGGAATTAC CATTCCCGAA
CATCTGGGCG GTCTGGGGGC GGGCTACGTC AGCTATGGAC TCGTCGCGCG CGAGGTGGAG
CGGGTGGACA GCGGATATCG CTCCATGATG TCCGTGCAAT CGTCCTTGGT GATGTATCCG
ATCAATGCCT ATGGTTCTGA TGAGCAAAGA CAAAAATATC TGCCCGGCCT GGCGGCAGGC
ACAAAGATCG GCTGCTTCGG ACTGACCGAG CCTGACGCAG GATCCGACCC GGCGGGCATG
AAGACCACGG CCAAAAAGAC TGAGGGCGGC TATGTGATCA ACGGCGCGAA GATGTGGATT
TCCAACGCGC CCATTGCTGA TGTGTTCGTC ATCTGGGCCA AATCCGATGC CCATGGCGGC
AAGATCCGGG GCTTTGTGCT GGAAAAGGGC ATGAAAGGCC TCTCTGCGCC CAAAATCGGC
GGCAAACTCA GCCTGCGCGC CTCGGTCACG GGCGAAATCG TGATGGACAA TGTCGAGGTC
GGCGAAGACG CGCTTCTACC CGGTGTCGAA GGCCTGAAAG GGCCGTTTGG CTGTTTGAAC
CGCGCCCGCT TCGGCATCTC CTGGGGGGTG ATGGGTGCGG CCGAGGATTG CTGGCACCGG
GCCCGCGACT ATGGTCTTGA CCGCGTGCAA TTCGGCCGGC CTTTGGCGCA GACGCAGCTC
TTTCAGAAGA AGCTGGCGGA CATGCAGACC GAGATCGCCC TCGGCCTCCA GGGCGCCCTG
CGCGCGGGGC GGATGATGGA GGACGGGACC TGCGGGCCGG AGCTTATCTC TTTGATGAAG
CGCAACAATT GCGGCAAAGC GCTGGAGATC GCCCGCCATG CGCGCGACAT GCATGGCGGC
AACGGGATCA TGGCGGAATA CCACGTCATG CGTCACGCCC AGAACCTGGA AACCGTCAAC
ACCTACGAGG GCACGCATGA TGTGCATGCC CTCATTCTGG GGCGCGCCCA GACCGGGCTG
CAGGCCTTTT TCTGA
|
|---|
| Protein sequence | MPDGQTRHTG PSLAPFDWAD PFHLADQLSD EERMIAESAR AYAQDKLLPR VTDAYLEEHV
TPDVFAEMGE MGLLGITIPE HLGGLGAGYV SYGLVAREVE RVDSGYRSMM SVQSSLVMYP
INAYGSDEQR QKYLPGLAAG TKIGCFGLTE PDAGSDPAGM KTTAKKTEGG YVINGAKMWI
SNAPIADVFV IWAKSDAHGG KIRGFVLEKG MKGLSAPKIG GKLSLRASVT GEIVMDNVEV
GEDALLPGVE GLKGPFGCLN RARFGISWGV MGAAEDCWHR ARDYGLDRVQ FGRPLAQTQL
FQKKLADMQT EIALGLQGAL RAGRMMEDGT CGPELISLMK RNNCGKALEI ARHARDMHGG
NGIMAEYHVM RHAQNLETVN TYEGTHDVHA LILGRAQTGL QAFF
|
|---|
| |