Gene Jann_2545 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_2545 
Symbol 
ID3935008 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp2549022 
End bp2549783 
Gene Length762 bp 
Protein Length253 aa 
Translation table11 
GC content59% 
IMG OID637904909 
Productphosphoribosylaminoimidazole-succinocarboxamide synthase 
Protein accessionYP_510487 
Protein GI89055036 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0152] Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase 
TIGRFAM ID[TIGR00081] phosphoribosylaminoimidazole-succinocarboxamide synthase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.179705 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.630296 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCACGCC GGAAGCTCGT CTATGAAGGC AAAGCAAAAA CCCTGTATGA GGGGCCGGAG 
CCAGGCACGC TGGTGCAGTA TTTCAAAGAC GATGCCACCG CGGGCAATGG TGAGAAGCGC
GACGTGATCG ACGGCAAGGG CGTGTTGAAC AACCGCCTGT CGGAGTTCTT CATGAAGGGC
CTTGGCAATA TCGGGGTGCC GACGCATTTT ATCAAACGCC TCAACATGCG CGAACAGCTG
ATCCGCGCCG TAGAGATCAT TCCGCTGGAG GTTGTGGTGC GCAACACGGC GGCGGGCTCT
ATCTGTTCCC GTCTGGGGAT CGAGGAGGGC ACACCGATGC CGCGCCCGAT CGTGGAATTC
TACTTCAAGA ATGACGACCT GAACGACCCG ATTGTCAGTG AAGAGCATAT CATTGCCTTC
GGGTGGGCCG CGCAGCAGGA TTTGGACGAT ATGGTGAGCC TGGCCTTGCG GGTGAACGAT
TTCCTCAGCG GGCTGATGCT GGGGGTCGGC ATCAAACTGG TGGATTTCAA GATCGAGATC
GGGCGGATCT GGGATGGCGA TTTCATGCGC CTGATCGTGG CCGATGAGAT CAGCCCCGAC
AGTTGCCGCC TGTGGGATAT CGAGACGGGG CGCAAGCTGG ACAAAGACGT GTTCCGCCGC
GATCTGGGGG ACCTGGCCGA TGCCTATACG GAAGTGGCCA AACGGCTCGG GATCATGCCC
CAGGGCCCGG TTGGCGCGAT CAAGCCCACG CTGATTAACT GA
 
Protein sequence
MARRKLVYEG KAKTLYEGPE PGTLVQYFKD DATAGNGEKR DVIDGKGVLN NRLSEFFMKG 
LGNIGVPTHF IKRLNMREQL IRAVEIIPLE VVVRNTAAGS ICSRLGIEEG TPMPRPIVEF
YFKNDDLNDP IVSEEHIIAF GWAAQQDLDD MVSLALRVND FLSGLMLGVG IKLVDFKIEI
GRIWDGDFMR LIVADEISPD SCRLWDIETG RKLDKDVFRR DLGDLADAYT EVAKRLGIMP
QGPVGAIKPT LIN