| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2244 |
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| Symbol | hfq |
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| ID | 3934698 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 2252412 |
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| End bp | 2252645 |
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| Gene Length | 234 bp |
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| Protein Length | 77 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637904601 |
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| Product | RNA-binding protein Hfq |
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| Protein accession | YP_510186 |
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| Protein GI | 89054735 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1923] Uncharacterized host factor I protein |
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| TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0488883 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCCGAAA ATAAACAAAA CTTGCAGGAC GCGTTTCTTA ATCACGTGCG CAAGACCAAA
GTACCGGTAA CGATTTTTTT GATCAACGGC GTGAAGCTGC AAGGCGTGAT CACGTGGTTT
GACAACTTCT GTGTTCTGCT GCGCCGCGAT GGCCAGTCGC AACTTGTCTA CAAGCACGCG
ATTTCCACCG TCATGCCAGC CCAACCCATC AGCCTCTACG ACGGGGAAGA GTGA
|
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| Protein sequence | MAENKQNLQD AFLNHVRKTK VPVTIFLING VKLQGVITWF DNFCVLLRRD GQSQLVYKHA
ISTVMPAQPI SLYDGEE
|
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