| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2122 |
|---|
| Symbol | |
|---|
| ID | 3934575 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 2131349 |
|---|
| End bp | 2132245 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637904478 |
|---|
| Product | periplasmic binding protein |
|---|
| Protein accession | YP_510064 |
|---|
| Protein GI | 89054613 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0614] ABC-type Fe3+-hydroxamate transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.10692 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.278949 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTGT CAATTCTTGC AACCGTCGTC ACATTGGCCC TGTCTGGGAC AGCTTTCGCC
GACACGATCA CCCACGCCAT GGGCGAGACG GACGTGCCCG AGGCGCCCCA GCGGATCGTC
ATGCTGACCA ATGAGGGGAC GGAAGCGTTG CTGTCGCTTG GTCTGACCCC TGTCGGCGCA
GCCAACAGCT GGACCGGCGA TCCGTGGTAC ACCCATATCA CGCCGCAGAT GGACGGCGTG
GAACCGCTCG GCAACGAGAC AGGCATCAAC CTGGAACTCG TCGCCGCACT TGAGCCGGAC
CTGATCCTCG GCAACATGCA GCGCCATGAA GAGATCTACA CCCAACTCAG CGCCATTGCG
CCCACTGTGA TGTCGGAACG CCTGCGCGGC GATTGGCGCG TCAATTATGC ACTTTATGCA
GAGGCCGTGG GCATGGCCGA TGAAGGCGCC CAGATCCTCG CGGATTACGA CGCGCGGGTC
GCCGAGTTGT CTGAGGCTTT GGGCGACAAC CTGTCTGAGG AGGTTTCGGT GATCCGCTTT
CTCGCCGCGC ACATCCGTAT CTACCAACTC GACAGTTTCT CTGGCGTGAT CCTCAGCAAC
CTCGGCTTTG CCCGGCCCGC GATCCAGGAC GTGGAAGACT TCGCCATGCG CGTTGGCCGT
GAAAGCATCC CAGATATGGA CGGGGACCGG ATCTTCCACT TCACCTACGA TAACGGCAAC
GGAGAAGGCG AAGCCGCCGC TGAGCAGGCG CTGGTCGATC CCCTTTGGCA GGGTCTGGCC
GCCGTGCAGG AAGGCCGCGT CCATTCCGTC AGCGATGAGG CTTGGAACAC CGCAGGCGGT
ATTCTTGCGG CGCGCCTGAT GCTCGATGAC ATTGCACGCA TCTATGGCGT CGAATAG
|
|---|
| Protein sequence | MRLSILATVV TLALSGTAFA DTITHAMGET DVPEAPQRIV MLTNEGTEAL LSLGLTPVGA
ANSWTGDPWY THITPQMDGV EPLGNETGIN LELVAALEPD LILGNMQRHE EIYTQLSAIA
PTVMSERLRG DWRVNYALYA EAVGMADEGA QILADYDARV AELSEALGDN LSEEVSVIRF
LAAHIRIYQL DSFSGVILSN LGFARPAIQD VEDFAMRVGR ESIPDMDGDR IFHFTYDNGN
GEGEAAAEQA LVDPLWQGLA AVQEGRVHSV SDEAWNTAGG ILAARLMLDD IARIYGVE
|
|---|
| |