| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1962 |
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| Symbol | |
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| ID | 3934413 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 1955731 |
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| End bp | 1956477 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637904316 |
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| Product | hypothetical protein |
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| Protein accession | YP_509904 |
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| Protein GI | 89054453 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.000465234 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.472 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGCATTC AGGCCTGTGC AGATCTGGTC GCACGCGGGG ATCCGCGCCG GTTTCGGGCG
GCGATGGCAG CCCCCCTGGC GGCGCGGGAG GTCCTGTTGC CGCTCTATGC GTTCAACATC
GAAGTGAGCC GCGCCCCTTG GGTGACCGAG GAGCCGATGA TCGCAGAGAT GCGCCTGCAA
TGGTGGCGCG ATGCGCTGGA AGAAATCGCG GAGGGTCGGG CGCGCCGCCA TGAGGTGGTT
GATGCGCTGG GGTTTCTGGA TGCCGAGGGC GTCGAGGCGC TGGACCAGCT GATCGCAGCA
CGGCGGTGGG ACGTCTATAA GGATGCGTTT GAGGATGAGG CGGCCTTTGC GCAATATATC
CAGCGGACCT CAGGCCATCT GATCGACGCA GGGATCCGTG CGTTGGGCGG GACGCCGACG
GCGGCCACAG ACGCCCTCGG CACCGCCGCC GGGCTGGCGC GGTATCTGGT GGCGGTGCCC
GCGCTTGAAG CGCGCGGGCG GGTGCCGCTC CTTGATGGCC GCGCTGCGGC CCTCTCCTCG
CTGGCACAAG GCGCGCTGCG CGCGTGGCCC AAGCGGGTGG ATGTGGTGAT GCCCGCACGG
GCGGCGCTGT TTGAGGTGGC AGGGGCCAAG GCCATCTTGA AACGCGTGGT CGCAGATCCG
GGGGCCGTGG CGGAGGGGCG GCTGGACGTG CCGCAGGGGC GCGAAACGCT CAGCCTGATG
GCGGCCTCGT TCCTGGGGCG GATCTGA
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| Protein sequence | MSIQACADLV ARGDPRRFRA AMAAPLAARE VLLPLYAFNI EVSRAPWVTE EPMIAEMRLQ
WWRDALEEIA EGRARRHEVV DALGFLDAEG VEALDQLIAA RRWDVYKDAF EDEAAFAQYI
QRTSGHLIDA GIRALGGTPT AATDALGTAA GLARYLVAVP ALEARGRVPL LDGRAAALSS
LAQGALRAWP KRVDVVMPAR AALFEVAGAK AILKRVVADP GAVAEGRLDV PQGRETLSLM
AASFLGRI
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