Gene Jann_1955 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_1955 
Symbol 
ID3934406 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp1948740 
End bp1949363 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content63% 
IMG OID637904309 
Productouter membrane protein, putative 
Protein accessionYP_509897 
Protein GI89054446 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3637] Opacity protein and related surface antigens 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.077824 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.659935 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACATG CAGTATTTAC AGGCGCGCTT GCCGTTCTCC TGACCCCAAT GGCCGCGTTT 
GCCGGTGGCT ATGTTGCCCC GGAACCCGTC GCGGCAGCGC CGGTTGTCGC CGCACCTGCG
CCGGTGACCT ACGATTGGTC GGGCTTCTAC GGTGGTGTGC AGTTGGAATA TGGTGACGTG
ACCGCCGACA CGGCGGCTGG CGTTGAGGCG GCGACCGGCG ACGGCGCCCT TTACGGTCTG
TTTGGCGGTT ACCGCTATGA CCTGGGCAAT GTCGTGGTTG GTGCAGAGCT GGACTTGAAC
CTGGCCGATA TCGACCTGGA TGACCCGACC GGAGCCACCA TCGGATCGCT CGATTCCGTT
CACCGTCTGG GTGCGGAAGT CGGGTATGAC GCTGGTCCCG CACTGCTTTA CGGTACGGTC
GGTGTGGCCC AGGCCACCGC CACGCTTGGC GCGGCCGATC TTCAGGACAA CGGCTATTTC
TACGGCGCAG GTATCGACTA CCTCGTGACC GATCAGATCA CCGTCGGTGC GGAAGTTCTG
CAGCACGAGT TTGACGACTT CGACGGCACG GGCCTGGACA TCTCGGCCAC GACCTTCGGC
ATCAACGCGG CGTTCCGCTT CTAA
 
Protein sequence
MRHAVFTGAL AVLLTPMAAF AGGYVAPEPV AAAPVVAAPA PVTYDWSGFY GGVQLEYGDV 
TADTAAGVEA ATGDGALYGL FGGYRYDLGN VVVGAELDLN LADIDLDDPT GATIGSLDSV
HRLGAEVGYD AGPALLYGTV GVAQATATLG AADLQDNGYF YGAGIDYLVT DQITVGAEVL
QHEFDDFDGT GLDISATTFG INAAFRF