Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_1955 |
Symbol | |
ID | 3934406 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | + |
Start bp | 1948740 |
End bp | 1949363 |
Gene Length | 624 bp |
Protein Length | 207 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637904309 |
Product | outer membrane protein, putative |
Protein accession | YP_509897 |
Protein GI | 89054446 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3637] Opacity protein and related surface antigens |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.077824 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.659935 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGACATG CAGTATTTAC AGGCGCGCTT GCCGTTCTCC TGACCCCAAT GGCCGCGTTT GCCGGTGGCT ATGTTGCCCC GGAACCCGTC GCGGCAGCGC CGGTTGTCGC CGCACCTGCG CCGGTGACCT ACGATTGGTC GGGCTTCTAC GGTGGTGTGC AGTTGGAATA TGGTGACGTG ACCGCCGACA CGGCGGCTGG CGTTGAGGCG GCGACCGGCG ACGGCGCCCT TTACGGTCTG TTTGGCGGTT ACCGCTATGA CCTGGGCAAT GTCGTGGTTG GTGCAGAGCT GGACTTGAAC CTGGCCGATA TCGACCTGGA TGACCCGACC GGAGCCACCA TCGGATCGCT CGATTCCGTT CACCGTCTGG GTGCGGAAGT CGGGTATGAC GCTGGTCCCG CACTGCTTTA CGGTACGGTC GGTGTGGCCC AGGCCACCGC CACGCTTGGC GCGGCCGATC TTCAGGACAA CGGCTATTTC TACGGCGCAG GTATCGACTA CCTCGTGACC GATCAGATCA CCGTCGGTGC GGAAGTTCTG CAGCACGAGT TTGACGACTT CGACGGCACG GGCCTGGACA TCTCGGCCAC GACCTTCGGC ATCAACGCGG CGTTCCGCTT CTAA
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Protein sequence | MRHAVFTGAL AVLLTPMAAF AGGYVAPEPV AAAPVVAAPA PVTYDWSGFY GGVQLEYGDV TADTAAGVEA ATGDGALYGL FGGYRYDLGN VVVGAELDLN LADIDLDDPT GATIGSLDSV HRLGAEVGYD AGPALLYGTV GVAQATATLG AADLQDNGYF YGAGIDYLVT DQITVGAEVL QHEFDDFDGT GLDISATTFG INAAFRF
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