| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1930 |
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| Symbol | |
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| ID | 3934381 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 1918247 |
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| End bp | 1919629 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637904284 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_509872 |
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| Protein GI | 89054421 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.135248 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCTTCA CCGACCATAT CCGCGCCACG CTCAAGCTTG GATTGCCCCT GATCGGCGGG
CAATTGGCGC AGACATTCAT CGGGGTGACG GATACCGTGA TGATGGGCTG GTACGGGGTT
GAAGAGCTGG CCGCCGTGGC TCTGGGGTCG TCCTATTTCC ACCTGATCCT GATCCTCGGC
ATGGGGTTCG GCCTTGCGGT CATGCCCATG GTGGCCTCGG CCGCCGCGCA GGACGATGAA
TTGCAGGTGC GCCGGGTCAC GCGGATGGGT CTGTGGATTT CCATCGCCTT CTCGGCCCTG
GTGATGCCGC TCTTCTGGTT TTCCGAGGCG TTGCTGCTGC TGGCGGGGCA AACGGCACAG
GTCTCTGCCG ACGCGCAGGT CTATCTGCGG ATCGCCGGTT GGGCGATTTT GCCCGGGGTT
CTGCTGGTGG TGCTGCGCTC CCATCTCAGC GCGTTGGAGC GGCCCAACAT CGTGCTGTGG
GCGTGGCTTG GCGGCGTGGT CCTGAACGCC TGCGTGAACT GGGTTCTGAT CTTCGGCAAC
CTCGGCGCGC CGGAGCTGGG CATTGCGGGG GCGGCGGCGG CGTCGGTGTT CACGCACGTG
TTGATCTTCG CCATTCTGGC GCTCTATGCG GCGCGCGCGG ATGGGCTGCG GCACTACGCG
CTTTTCGCGC GCTTCTGGCG CCCGGATTGG GAGGCGATGG GCCAGGTCTT TCGCCTTGGC
TGGCCCATCG CGGTGACTCT GCTGCTGGAG GCCGGGCTCT TCATGGCGAC GATGATCATG
ATGGGCTGGA TCGGCACGCT AGAGCTGGCC GCCCACGGCA TCGCGCTGCA GATCATATCA
GTGACGTTCA TGGTGCATAT CGGCCTCAGC TCCGCCGCCA CGGTGCGCAC CGGCCGCGCC
TGGAGCAAGA ACGACGCCCA GGGCCTGCGC CAGGCGGCGG TGGCGGCGCT GCTGTTGTCG
GGCGTGACCG TTGCGGCCAC CATCCTGCTC TTCGTGGCCC TGGCCGAGCC CCTTGTGGGC
CTGTTCGTGG ACCCGTCCGA CCCGCTGCGC CCGCAGATCA TCGCGATCGG CGCGAGCCTT
CTTATCGTCG CCTGCGTGTT TCAACTGGCC GATGCGGCGC AGGTCATGGC CCTGGGCCTG
CTGCGCGGCG TCCAGGATAC GGGCGTGCCG ATGGTCTACG CCTTCATCAG TTACTGGATC
ATCGGGGTGC CGCTGGCCTA TTGGCTTGGC TTCCCGCTGG GGTGGGAGGG TGAGGGGATC
TGGATTGGCC TCGCCATGGG GCTCGCCGTG GCGGGTCTCG TGCTGGTGAT CCGGTTCTGG
CGGATCGCGG CGCGGCTGGG CGCGGCGCCG TCTGGTGGTG ACGGCGAGGT CGGTGCCAGA
TAA
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| Protein sequence | MIFTDHIRAT LKLGLPLIGG QLAQTFIGVT DTVMMGWYGV EELAAVALGS SYFHLILILG
MGFGLAVMPM VASAAAQDDE LQVRRVTRMG LWISIAFSAL VMPLFWFSEA LLLLAGQTAQ
VSADAQVYLR IAGWAILPGV LLVVLRSHLS ALERPNIVLW AWLGGVVLNA CVNWVLIFGN
LGAPELGIAG AAAASVFTHV LIFAILALYA ARADGLRHYA LFARFWRPDW EAMGQVFRLG
WPIAVTLLLE AGLFMATMIM MGWIGTLELA AHGIALQIIS VTFMVHIGLS SAATVRTGRA
WSKNDAQGLR QAAVAALLLS GVTVAATILL FVALAEPLVG LFVDPSDPLR PQIIAIGASL
LIVACVFQLA DAAQVMALGL LRGVQDTGVP MVYAFISYWI IGVPLAYWLG FPLGWEGEGI
WIGLAMGLAV AGLVLVIRFW RIAARLGAAP SGGDGEVGAR
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