Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_1854 |
Symbol | |
ID | 3934305 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | + |
Start bp | 1841576 |
End bp | 1842769 |
Gene Length | 1194 bp |
Protein Length | 397 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637904208 |
Product | O-succinylhomoserine sulfhydrylase |
Protein accession | YP_509796 |
Protein GI | 89054345 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
TIGRFAM ID | [TIGR01325] O-succinylhomoserine sulfhydrylase |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.58476 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00243487 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAAAGATA CCGCTCGCAA ACACTGGTCC AAACGCACCC GCGCGGTGCA TGCAGGCTCC CGCCGCAGCC AATACGGAGA GCTGTCGGAA GCGATGTTCC TGACGCAGGG CTTCGTCTAT CCCACCGCCG AGGATGCGGA GGCCCGTTTC ATCAAATCCG GCGAGGATGA GTATATCTAC GCCCGCTACG GCAACCCGAC CGTGGCGATG TTTGAAGACC GCATCGCGTC GCTGGAAGGG GCGGAGGCGG GCTTTGCCAC GGCCTCGGGC ATGGCGGCAG TCAATGGCGC GCTCACGTCG ATGCTGCGGG CGGGCGATCA CGTGGTGTCG TCCCGCGCGC TTTTTGGGTC GTGTCATTAT GTCTTGGACG AGATCCTGAC CCGGTTTGGC GTGGACGTCA CCTTCGTGGA CGGCCCCGAT CTGGACGCGT GGCGCGCCGC CATGCGCCCG GACACCAAGG CGGTGTTCTT CGAATCGCTC TCCAATCCCA CGCTGGAGAT GATCGACATT CGCGCCGTGG CTGAGATCGC CCATGCCGTC GGTGCGACGG TCATCTGCGA TAACGTCTTT GCCACCCCCA CGTTCAGCGA TGCCATCGCC CAAGGCGTCG ATGTCGTTGT CTATTCCACC ACCAAACACA TTGACGGGCA GGGGCGCTGT CTGGGGGGCG TGATCCTGGG GACGGAAGAA TTTATCCGCA AAACGGTGGA GCCTTACCTC AAGCACACCG GCGGCGCGAT GTCGCCCTTC AACGCGTGGG TGATGCTGAA GGGGCTGGAG ACGATGGACC TGCGGGTGCG GGCGCAAACT GCGTCGGCTC AGGCGATTGC GGAGGCGCTG CAAGATGCGC CCGGTGTGGC GCGGGTGATT TATCCCGGCC TCGCCGACCA CCCCCAGCAC GCGCTCTGCC AGGCGCAGAT GGGCGAGGGG GGGACCGTCG TTGCGGTGGA GGCCACGGAT GGACAGGCGG GGGCGTTCCG CGCGCTCAAT GCGCTGGAGA TCTTCACGAT TTCCAACAAT CTTGGCGATG CGAAGTCCAT TGCCACCCAT CCCACGACGA CCACCCACCA GCGCCTGACC GATGAGCAGC GCGCGGAGAT GGGGATCACG CCGGGCCTGA TCCGTCTGTC GATCGGCTTG GAAGACACCG ATGATCTGGT CGCAGACCTG CTTGATGCGT TGGAACTGGC ATGA
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Protein sequence | MKDTARKHWS KRTRAVHAGS RRSQYGELSE AMFLTQGFVY PTAEDAEARF IKSGEDEYIY ARYGNPTVAM FEDRIASLEG AEAGFATASG MAAVNGALTS MLRAGDHVVS SRALFGSCHY VLDEILTRFG VDVTFVDGPD LDAWRAAMRP DTKAVFFESL SNPTLEMIDI RAVAEIAHAV GATVICDNVF ATPTFSDAIA QGVDVVVYST TKHIDGQGRC LGGVILGTEE FIRKTVEPYL KHTGGAMSPF NAWVMLKGLE TMDLRVRAQT ASAQAIAEAL QDAPGVARVI YPGLADHPQH ALCQAQMGEG GTVVAVEATD GQAGAFRALN ALEIFTISNN LGDAKSIATH PTTTTHQRLT DEQRAEMGIT PGLIRLSIGL EDTDDLVADL LDALELA
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