Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_1838 |
Symbol | |
ID | 3934289 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | + |
Start bp | 1823833 |
End bp | 1824993 |
Gene Length | 1161 bp |
Protein Length | 386 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637904192 |
Product | ribonuclease D |
Protein accession | YP_509780 |
Protein GI | 89054329 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0349] Ribonuclease D |
TIGRFAM ID | [TIGR01388] ribonuclease D |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.529278 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0732716 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCCGCACA CAATCACCAC CACCGATGAG CTGGCCGCCT ATTGCGCCCG CGCCGCAACC CAACCTTATG TCACGGTCGA CACGGAATTC CTGCGCGAAC GCACCTATTT TGCGCAGCTC TGCCTGGTGC AGGTGGCCAT GCCCGGCACC GATGACACGG ACGCGGTCCT GATCGATCCC CTGGCCGAAG GGCTTTCGCT GGAACCGCTT TACGAGCTGT TCCGAAACGT TAATGTCGTT AAGGTTTTTC ACGCCGCGCG CCAGGATCTG GAAATTTTCT TCGTTGAAGG CGGCCTCGTG CCCACGCCCT TGTTCGATAC GCAAGTGGCC GCGATGGTCT GTGGTTTCGG GGATCAGGTC GGGTACGAGA CGCTGGTGCG CCGGATTGCG AAGGCCAATC TGGACAAATC CTCTCGCTTT ACCGACTGGT CGCGCAGGCC GTTGTCGGAT GCGCAAAAGG TCTACGCGCT GGCCGATGTG ACCTATTTGC GCGAGATCTA CGAGTATCTC TCGGCGGAGT TGGCGCGGAC CGATCGCACC CATTGGCTGG AAGAGGAATT GGCTCAACTA ACCAATGCCG ACGCCTATGT TGTTGATCCT GAGAATGCGT GGAAGCGTTT GAAGTTGCGA TCCAATTCAG GGCGTGTCGT GGCGATTGCA CAGCAGCTTG CGGCCTTCCG CGAAACCTAT GCCCAGGAAA AGAACGTGCC CCGCAACCGG GTGCTGAAAG ACGATGCACT GTTGGAGTTG GCCGGAACCA AGCCCAAGAC CGTGGCCGAT CTTGGCAAGT CGCGTCTTTT GTTGCGCGAT GCCCGCAAAG GCGCGATTGC CGAGGGGCTT GTGGCCGCTG TCGCGCGCGG CATGTCGGTG CCCAACAGCG AAATCCCCAA GGTGCAAGCG GGCCGCGACC GGTCCAACCT GAACCCGGCC CTGGCCGATC TGTTGCGGGT TCTGTTGAAG GCCAAGGCCG AAAACGCCGG TGTTGCGACG AAGTTGATCG CGTCCTCCAG CGATCTTGAC GACATCGCGT CGGGGTTCAC GGATGGGGTC TGGGCCTCAG GCTGGCGCAG TGAAGTCTTC GGCGCGGATG CGCTTCGGCT TTTGAACGGA GAGGTCGCCC TTGCGGCCAA GGGCCAGAAA GTCAAGATCG TCGAGGTTTA G
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Protein sequence | MPHTITTTDE LAAYCARAAT QPYVTVDTEF LRERTYFAQL CLVQVAMPGT DDTDAVLIDP LAEGLSLEPL YELFRNVNVV KVFHAARQDL EIFFVEGGLV PTPLFDTQVA AMVCGFGDQV GYETLVRRIA KANLDKSSRF TDWSRRPLSD AQKVYALADV TYLREIYEYL SAELARTDRT HWLEEELAQL TNADAYVVDP ENAWKRLKLR SNSGRVVAIA QQLAAFRETY AQEKNVPRNR VLKDDALLEL AGTKPKTVAD LGKSRLLLRD ARKGAIAEGL VAAVARGMSV PNSEIPKVQA GRDRSNLNPA LADLLRVLLK AKAENAGVAT KLIASSSDLD DIASGFTDGV WASGWRSEVF GADALRLLNG EVALAAKGQK VKIVEV
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