| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1593 |
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| Symbol | |
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| ID | 3934041 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 1574118 |
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| End bp | 1575923 |
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| Gene Length | 1806 bp |
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| Protein Length | 601 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637903944 |
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| Product | BCCT transporter |
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| Protein accession | YP_509535 |
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| Protein GI | 89054084 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00794806 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCATG CAGGCCTGTG GCTGCGGATA CGCAATACGG GAGACATCAC CATGGCGATC
GAGCCACCCA TCACAGACCT CGATATCCCG ACAGCCGATT CCGGTTTCTA CAAGGGATTT
ACAAAGATCG TCGCACTGAC AGGGAAATTC CTGGTCGCCG TGCTGATCAT ATGGGCGCTG
CTGCCGGCAG CATCGCTGAC GTTCGGGCCC GCGGCAGAGG GCTCCACCTC GCTCTTCATC
GACGCGGACG GCAATGTCTC CGCTGCGGCG GGCGTCGTGC TTGGCGGGAT CAATTCGCTG
ATTCTGGCGA CATTCAATTA CTGGTACGTC TACGTCATGG CGTTCTTCGT GATCCTATGC
ATCATCCTGG CGCTTTGGCC CGCCTCGGGC CGCCTGAAGA TGGGACTGGA TGACGACAAA
CCAGAATTCA CCAACTTCTC CTGGTTTTCG ATGATGTTTG GCGCCGGGAT CGGGATCGGG
ATGCTGACCT TTGCCACGGC AGAGCCGATG TATCACTGGG GCTCCAACCC GTCGACCATT
CAGGGTATCA CCGAAGGCTC CACCGCCGGA AACGTGCGCG ACGCCTATAT CTGGTCCTTC
ACCCACTGGG GTCTGGCCGC ATGGGCCTCC TACGCCATTG TCGGTCTGGC GCTTGGCTAC
TTCGCGTACC GCCGCAGTCT GCCGCTGACG ATCCGCTCGG CGCTGGTGCC GATCTTCGGC
AAGTCGATGG AGGGTGGTCT GGGCCACGCC GTGGACATCG TGGCCGTTGT GGCGACAGTT
CTGGGCGTGT CGCAGACACT CGGTTTCGGG GTGGAGCAAT TCATCTCGGG CCTCACCCGG
ATCGGGGTGG GCGATTGGCT ACAGCAAACC GCTGAAGATG GCTCGGTTTC GGCCTCGACC
GCCGGTATCA TCGTGGCCCT GATGGTCATC ATGGGCGCCT CGACCCTGTC TGCGCTGTCC
GGCGTGGGCA AAGGCATCAA ATGGCTGTCC AACATCAATA TGGGCCTCAG CTTCTTTATC
CTGCTGTTCT TCCTGGCCTT TGGCTCCACC TTCTTTGGGC TTCAGGCCCT GGTCGTGGGC
ATCTTCGACT ACCTCATCTC AATACCCGGC AATATCTTCA CCGTCTGGGT CTCCGATGGC
GTCGATGGGT CAGAGGCCGC GGGCCTTGCC GGTTGGCAAG GTGGCTGGAC CATCTTCTAC
TGGGCCTGGT GGATCGCATT CGCGCCCTTC GTGGGCGTGT TCCTGGCGCG GATCTCAAAG
GGTCGCACGG TGCGGGAATA TGTGTTGGGC GCAATGATCG TGCCTGCCAT CATGTGCTTC
ACCTGGTTTG CCATCGTGGG CGGCACGGCC ATTGATCTGG AGCTGAATGG CGGCGCAGGC
GGCGCGATCC AGGACGCTGG TCAATCCGAC CAGCTCTTCG CGATGCTGGC CGTGATGCTC
AGCGACAACC TCGCGTGGAT CATGTCGGTC ATCGTGGTGA TCCTGCTGCT GACCTACCTC
GTGACCTCGG CCGACTCGGC GGTTCTGATC ATCAACACGA TCAACGCCGC TGGTGACGAA
GGCCCAAAGG CCCGGCCTCA CATCATCTTC TGGGGTGCCG CGCTGGCGCT TGTCGTAGGT
GGTTTGATCA TCGCCGGTGG TCTTGGGGCC ATTCAGGCCG CGATGGTGAT CGGTGCCCTG
CCCTTCAGCC TTGTCATGGT GCTTATGGGT CTGGCGTTGA TCAAGGCAAT CATCAACGAT
TCCCGCCGTG AAAAGCAGGG CGTCGCCACC ACCCATGATG AGATTGACAC CGTCCCTGCC
GAGTAA
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| Protein sequence | MRHAGLWLRI RNTGDITMAI EPPITDLDIP TADSGFYKGF TKIVALTGKF LVAVLIIWAL
LPAASLTFGP AAEGSTSLFI DADGNVSAAA GVVLGGINSL ILATFNYWYV YVMAFFVILC
IILALWPASG RLKMGLDDDK PEFTNFSWFS MMFGAGIGIG MLTFATAEPM YHWGSNPSTI
QGITEGSTAG NVRDAYIWSF THWGLAAWAS YAIVGLALGY FAYRRSLPLT IRSALVPIFG
KSMEGGLGHA VDIVAVVATV LGVSQTLGFG VEQFISGLTR IGVGDWLQQT AEDGSVSAST
AGIIVALMVI MGASTLSALS GVGKGIKWLS NINMGLSFFI LLFFLAFGST FFGLQALVVG
IFDYLISIPG NIFTVWVSDG VDGSEAAGLA GWQGGWTIFY WAWWIAFAPF VGVFLARISK
GRTVREYVLG AMIVPAIMCF TWFAIVGGTA IDLELNGGAG GAIQDAGQSD QLFAMLAVML
SDNLAWIMSV IVVILLLTYL VTSADSAVLI INTINAAGDE GPKARPHIIF WGAALALVVG
GLIIAGGLGA IQAAMVIGAL PFSLVMVLMG LALIKAIIND SRREKQGVAT THDEIDTVPA
E
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