Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_1322 |
Symbol | |
ID | 3933769 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | + |
Start bp | 1286131 |
End bp | 1286820 |
Gene Length | 690 bp |
Protein Length | 229 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637903672 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_509264 |
Protein GI | 89053813 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCCCGCC CCCGTATCGC CCTGATCACC GGCGCAAACC GTGGCATTGG CCGCGAGGTT GCCCGGCAAT TGGCCCAAGA TCACGGCCTG CACGTTCTGC TCGGCTCCCG TGACCTCATC AAAGGAGAAG AAGCTGCACG TGAACGACCC AACGCCCGTG CCATCCAATT GGACGTGGCC GACCCGAAAT CGGTGGCCCG CGCATTTGAG CAGATCAGCC AGGAGGTCGG GCGGCTTGAT GTGCTGGTGA ACAATGCCGG CATCGACTAT GACACCGACC AACGCGCCAG CATCGCTGAC CTGACCCGCG TCCGGCGCGC GTTTGACACG AACCTGTTCG GCGCGTGGGA TGTGGCGATT GCCGCTACAC CGCTACTGAA AAAGGGCCTG TCTCCTCGCC TTGTCAACGT CTCCTCCGGT GCGGGGGCGC TGACCGGCAT GGGCGGGGGA ACAGCGAGCT ACGGTATCTC AAAGGCTGCG CTCAACGCCC TGACGATCAA GCTGGCAGCG GAGTTGCGAA GCGACCGCGT CCTCGTGAAC GCCGTCTGTC CGGGTTGGGT CGCAACAGAC ATGGGTGGTG GGGGTCGACC GATCCCCGAG GGTGCAAAAG GCGTCGTCTG GGCCGCAACA TTGCCCGACA CGGGACCAAC AGGCGGCTTC TTCCGCGATG GGAACCGGAT CGATTGGTGA
|
Protein sequence | MPRPRIALIT GANRGIGREV ARQLAQDHGL HVLLGSRDLI KGEEAARERP NARAIQLDVA DPKSVARAFE QISQEVGRLD VLVNNAGIDY DTDQRASIAD LTRVRRAFDT NLFGAWDVAI AATPLLKKGL SPRLVNVSSG AGALTGMGGG TASYGISKAA LNALTIKLAA ELRSDRVLVN AVCPGWVATD MGGGGRPIPE GAKGVVWAAT LPDTGPTGGF FRDGNRIDW
|
| |