Gene Jann_1002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_1002 
Symbol 
ID3933446 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp959842 
End bp960657 
Gene Length816 bp 
Protein Length271 aa 
Translation table11 
GC content66% 
IMG OID637903350 
Productlytic transglycosylase, catalytic 
Protein accessionYP_508944 
Protein GI89053493 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.578014 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.810596 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCAGAC GGATTTGGAT AGCGACCGTG CTTGCGGTCG GGATGGCATG GCAGGTTGCC 
GCCCAGGACA GTGGGATACG GTTCGTTCGC GCGCCTGAAG CGGGTGATAC GGGTCCGCGT
ATCACGATTC AGATCACGGA AGAGGATATG GCGCGCCAGG GTGCCCCGGC GGAGGCGCCG
GCAACTGCAC TCGGTCCCGT CGCGCCACCG TCAGATATGG CCTATGACGG GGCGTCGGCC
TGGTTCTGGG CAGAAGTGCC AAGCCAGATG CCCGCAGATC CCACCCGCTT CTGGGCCGCG
CAGGAACATC TGGCGCTTGC GCCTGAGGCC AGCGGTTTGG GCGCGCCGCG TCTGGATACC
GTCAGCCGGA TCGCCGCAAC CCACGGGCGA GAGATTCTGG CGGCCACCAT CGGCACCCAG
GTCTCTCCTG CATTCGCGTT GGCGGTGATT GCGGCGGAAA GCGCGGGCCG CCCGGAGGCG
GTCAGCGGGG CAGGCGCGCA GGGGTTGATG CAATTGATCC CTGCCACCGC AGAACGGTTC
GGGGTGGAAG ATTCCATGGA CCCCTCCCAA AACATTGCAG GTGGCGTCGC CTATCTCGAC
TGGCTGATGG GAGAGTTCGA CCGCGATCCG ATTCTGGTCC TGGCCGCGTA TAATGCGGGG
GAGGGGGCGG TGACGCGGGC GGGTGGCGTG CCTGACTATG ACGAGACGCG CACCTATGTG
CCGAGGGTGC TGGCCGCGTG GGGCCTGGCG CGCGGCCTAT GCAACACGCC CCCGGATCTG
GTATCGGACG GATGCGTGTT CCAGGTGATG AACTGA
 
Protein sequence
MARRIWIATV LAVGMAWQVA AQDSGIRFVR APEAGDTGPR ITIQITEEDM ARQGAPAEAP 
ATALGPVAPP SDMAYDGASA WFWAEVPSQM PADPTRFWAA QEHLALAPEA SGLGAPRLDT
VSRIAATHGR EILAATIGTQ VSPAFALAVI AAESAGRPEA VSGAGAQGLM QLIPATAERF
GVEDSMDPSQ NIAGGVAYLD WLMGEFDRDP ILVLAAYNAG EGAVTRAGGV PDYDETRTYV
PRVLAAWGLA RGLCNTPPDL VSDGCVFQVM N