Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_0994 |
Symbol | |
ID | 3933438 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | - |
Start bp | 951882 |
End bp | 953372 |
Gene Length | 1491 bp |
Protein Length | 496 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637903342 |
Product | type II secretion system protein E |
Protein accession | YP_508936 |
Protein GI | 89053485 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.010804 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.584702 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTTCCA AATACAAAAA GGCTCCAAAG GGTGGCGAGG TCGCGCATAT TACCGACGTG GCAGCCGCGC CAAAGACCGA CGACGCGCCC GCACCAGAGA ATTCATCAGC CAAAGCGCAG ACCCCCGCGC CGAAAGTCGC GCGCAAACCG GGGGGATCTG CCGCCGCCAA GCCGGCCACG CCCGAAGCCG CGGGGGCTGA GGACAAGGAC CGCAAGCGCC GTCTGCGCCT GGATGAAATC AAGACAGAGA TGCATCACCG GCTGCTCGAC AACCTCAACC TCTCCGCGCT GGAGACGGCC AAGGAATCGG AACTTCGGTC TGAAATCACG TCGATCACGT CTGAGCAGCT TGGGGAGATG GGCGTCGTCC TGAACCGGGA GGATCGCCAG ACCCTCAACA TTGAGCTTTT CGATGAAGTC ACCGGTCTTG GTCCGTTGGA GCCTTTGCTG AAAGACGACG GCGTCAACGA TATTCTCGTC AACGGTCCCA ACCGGGTGTT CATTGAACGT GCCGGCAAGC TTCAACTCTC GGACGTGCGC TTCAAGGACG AGCGTCACCT ACTTCGGATC ATCGACAAGA TCGTGTCCGC CGTCGGCCGG CGGGTCGACG AAAGCAATCC TTACGTGGAC GCACGCCTGA AAGACGGCTC ACGTTTCAAC GCGATGGTGC CACCGGTGGC CGTCGATGGC TCGCTCGTCT CCATTCGTAA GTTCAAGAAA GAAAAGCTGG GGGTCGACGA TCTGGTTAAG TTCGGCGCCT TTTCCGAGGA GATGGCCGCC TACATTCAGG CTGCCGTGGC CTGTCGCCTG AACGTCATCG TCTCTGGCGG TACGGGCTCG GGCAAAACCA CAACGCTTAA CGCGCTATCG TCGTTCATCG ACAATTCCGA ACGGATCCTG ACGATTGAGG ATACGGCGGA ACTTCAACTC CAGCAGGTTC ACGTGGGCCG GATGGAAAGC CGCCCACCGA ACGTGGAGGG CAAAGGCGCC GTGACCCAGC GGGACTGTCT CCGCAACGCC CTGCGGATGC GCCCCGACCG TATCATTGTG GGTGAGACAC GCGGCGAAGA GGTCATCGAT ATGCTCCAGG CCATGAATAC CGGCCACGAC GGATCCATGA CGACGATCCA CGCCAACAAC GCCCGCGACG CCTGCTCACG CCTTGAAAAC ATGGTCGCTA TGGCAGGGAT CGAGATGCCG CTGAAGGCTG TTCGCGCCCA GATCTCCAGC GCTGTGCACC TGATCGTGCA GGCCTCTCGT CTGCAGGACG GCTCGCGTCG CATGGTCTCC ATCACCGAAG TGACGGGGAT GGAGGGCGAA GTGATCTCCA TGCAGGAGGT GTTCCGCTTC CAGCGCACCG GGCTCCAGCC CGACGGCAAG ATCCTCGGCC ATTTCACCGC CTGCGGCGTG CGGTCCTATT ATTCCGAGCG GTTCCGGCAG TGGGGCTATG ACCTGCCCGC GTCGATCTAT GAACCCATGG CAGCCCAGTA A
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Protein sequence | MFSKYKKAPK GGEVAHITDV AAAPKTDDAP APENSSAKAQ TPAPKVARKP GGSAAAKPAT PEAAGAEDKD RKRRLRLDEI KTEMHHRLLD NLNLSALETA KESELRSEIT SITSEQLGEM GVVLNREDRQ TLNIELFDEV TGLGPLEPLL KDDGVNDILV NGPNRVFIER AGKLQLSDVR FKDERHLLRI IDKIVSAVGR RVDESNPYVD ARLKDGSRFN AMVPPVAVDG SLVSIRKFKK EKLGVDDLVK FGAFSEEMAA YIQAAVACRL NVIVSGGTGS GKTTTLNALS SFIDNSERIL TIEDTAELQL QQVHVGRMES RPPNVEGKGA VTQRDCLRNA LRMRPDRIIV GETRGEEVID MLQAMNTGHD GSMTTIHANN ARDACSRLEN MVAMAGIEMP LKAVRAQISS AVHLIVQASR LQDGSRRMVS ITEVTGMEGE VISMQEVFRF QRTGLQPDGK ILGHFTACGV RSYYSERFRQ WGYDLPASIY EPMAAQ
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