| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0993 |
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| Symbol | |
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| ID | 3933437 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 950901 |
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| End bp | 951869 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637903341 |
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| Product | type II secretion system protein |
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| Protein accession | YP_508935 |
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| Protein GI | 89053484 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4965] Flp pilus assembly protein TadB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.146883 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCTCT CAATCGAACC TCTCATCTAT ATCGGCATTT TTGTTGGTGT GATCATGCTG
GTGAACGGCG TCTATCTGGC GGTGTTTGGC AAGTCGATCA GCCTGAATGC ACGTGTCAAC
CGGCGCCTGA CGATGCTGGA ACAGGGCACC TCGCGGGAGG ATGTTCTGGA CAAGCTTCGC
AAGGAGATGG ACCAGCACAA AGGCGGGATT AAGCTACCGT TCTACACAAT GATCGCCGAC
AAGGCGCAAA AGGGGAATAT CGCCTTCACG CCGCCGCAAC TGATGTTGGT GATGGCGGGC
GCTGCGGTCG CCGCATTCGT GCTGCTGCAG GTTTTGACAA CGGCATCCCT GCCAATCAGC
GTGCTCTGCG CCGTCGCCAT GGGGGTGGGT GGCGTCTATC TTTGGGTCAG CCGCACGGCC
AAAAAGCGCC TTTCGCTGTT GGAAGAACAA TTGCCCGACG CCGTGGAACT GATGGTCCGC
TCGCTGCGGG TGGGCCACCC CTTTGTGGCC TCCATCAACA CCGTGTCGCG CGAGATGTCA
GATCCTATCG CATCCGAGCT TGGCGTCATC GCGGATGAGG CCGCCTATGG CCGTGACGTT
GCGGAATCGA TTCGCGCCAT GGCCGACCGG CTGGACATCC AAGACCTTCG CTTCCTGGCG
GTGGCTGTGG GTATCCAGCA AACTTCCGGC GGCAACCTTG CCGAGATTCT GGCAGGCCTC
GCAGACGTCA TGCGCGCGCG CTTCAAGCTG TTCCGCAAAG TCCGCGTGAT CACGGCGGAA
GCGCGCGGAT CCGGCAACTT TCTATCGGTC TTCCCGATCC TCGCGCTGGT CGGCATCAAC
GTGATGCAGC CCGACTATTA TTCGGAGGTC ATTGATACTC CGGTCTTCAT TCCGGCCGCC
GCCGGCGTTG CCGTCGCTTT GGGCCTGAAT TGGGTCATCA TGCGCGTCCT CGTAAATATC
AAAGTCTGA
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| Protein sequence | MDLSIEPLIY IGIFVGVIML VNGVYLAVFG KSISLNARVN RRLTMLEQGT SREDVLDKLR
KEMDQHKGGI KLPFYTMIAD KAQKGNIAFT PPQLMLVMAG AAVAAFVLLQ VLTTASLPIS
VLCAVAMGVG GVYLWVSRTA KKRLSLLEEQ LPDAVELMVR SLRVGHPFVA SINTVSREMS
DPIASELGVI ADEAAYGRDV AESIRAMADR LDIQDLRFLA VAVGIQQTSG GNLAEILAGL
ADVMRARFKL FRKVRVITAE ARGSGNFLSV FPILALVGIN VMQPDYYSEV IDTPVFIPAA
AGVAVALGLN WVIMRVLVNI KV
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