| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0624 |
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| Symbol | |
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| ID | 3933066 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 596769 |
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| End bp | 597833 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637902970 |
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| Product | ribosomal large subunit pseudouridine synthase C |
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| Protein accession | YP_508566 |
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| Protein GI | 89053115 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGGCG TTCAGACGCT GGAAATCGGG CCGGACGACG GCGATCAACG GCTGGACCGC
TGGTTCCGCC GCATCTTTCC CCATGTGCCC CAGGGTCGGA TCGAGAAGAT GTGCCGCAAG
GGCGAGATCC GCGTCGATGG AGGCCGGGTG AAGTCCAACA CCCGGCTGGA AGTGGGGCAG
ATGGTCCGCG TACCGCCCCT GCCCGATGCT GCCGATCCAA AGGCGGATCC GGCAAACTGG
GTCAACAACG CCAGTCGCAT CAGTGACGCG GATGAGAAGA TGATCCGCGC CGCCGTGATC
TATCGCGACG ACCATATCAT CGCGATCAAC AAGCCCGCGG GCCTGCCGAC CCAGGGCGGC
ACCGGGCAGA GCCGCCATGT GGATGGGCTG GCGGAGGCGT TGAAGTTCGG GCTGGAGGAC
AAGCCGAGGC TGGTGCACCG GCTGGACAAG GACACGTCGG GCGTGCTGCT GATGGCGCGC
ACGCGGATGG GGGCGAAGGC GCTGACCGAT GCGTTTCGGC TGCGCTCCAC CCGGAAGATC
TATTGGGCTG CCGTTGCGGG ATCGCCCCTG CCGCGCATGG GGACGATCAA GCTGGGGCTG
GTGAAAGCGC CGGGCCATGG GCGCGGTGGC GAGAATGAGA AGATGCGCGC CGTGCCGGTG
GACGAGATCG CCCAGGTGGA TGGGGCCAAG CGGGCCGAGA CTGATTACGC GGTGATGTCC
AACCTTGGCG GTCGCGTGTG CTGGTGCGCG CTGGTGCCGA TTACGGGGCG GACGCATCAG
CTGCGCGCCC ACATGGCCGA GATCGGGCAT CCGATCATCG GTGACGGAAA GTATGGCGGC
AGCGGGCAGG AGAACCTTGG CGACGGTTGG GGCGCGCAAT TGGGCGGAGA GATCAGCCGC
AAGCTGCATC TTCACGCGCG CAGCCTGTCG TTTCGGCACC CGATGACGGG CGCGCAGGTC
AATCTGGTCG CGCCGCTGCC CGAGCATATG GCGAAGACGT GGGACACCCT CGGCTGGGAC
CCGCGCGATG TGCCCGCAGA CCCGTTCGAG GATGATGCGT TTTGA
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| Protein sequence | MSGVQTLEIG PDDGDQRLDR WFRRIFPHVP QGRIEKMCRK GEIRVDGGRV KSNTRLEVGQ
MVRVPPLPDA ADPKADPANW VNNASRISDA DEKMIRAAVI YRDDHIIAIN KPAGLPTQGG
TGQSRHVDGL AEALKFGLED KPRLVHRLDK DTSGVLLMAR TRMGAKALTD AFRLRSTRKI
YWAAVAGSPL PRMGTIKLGL VKAPGHGRGG ENEKMRAVPV DEIAQVDGAK RAETDYAVMS
NLGGRVCWCA LVPITGRTHQ LRAHMAEIGH PIIGDGKYGG SGQENLGDGW GAQLGGEISR
KLHLHARSLS FRHPMTGAQV NLVAPLPEHM AKTWDTLGWD PRDVPADPFE DDAF
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