| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0617 |
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| Symbol | |
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| ID | 3933059 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 590815 |
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| End bp | 591831 |
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| Gene Length | 1017 bp |
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| Protein Length | 338 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637902963 |
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| Product | DNA-directed RNA polymerase subunit alpha |
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| Protein accession | YP_508559 |
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| Protein GI | 89053108 |
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| COG category | [K] Transcription |
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| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
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| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCATA AAAATTGGCA AGAGCTGATC AAACCCACCC AGCTGGTCGT CCAGCCGGGC
ACTGATCCTG CGCGGAAAGC CACCGTCGTG GCTGAACCGC TGGAGCGGGG CTTCGGCCTG
ACGCTTGGCA ACGCGCTGCG GCGTGTTCTG ATGTCCTCGC TGCAAGGCGC GGCCATTACG
TCGGTGCAGA TTGACGGCGT GTTGCACGAA TTCTCCAGCG TCGCCGGTGT GCGCGAAGAT
GTCACCGACA TCGTGCTGAA CCTCAAGGGT GTGGCAATCC GCATGGACGC CGAAGGCCCC
AAGCGTGTTT CCATCTCCGC CAAGGGCCCC CGGGTCGTGA CGGCGGGTGA CATCAGCGAG
AGCGCAGGTA TCGACGTCCT CAATAAGGAT CACGTGATTT GCCACCTCGA CGACGGTGCT
GACCTCTACA TCGAGCTGAC GGTCAACACC GGCAAAGGCT ATGTGGCGGC TGACAAGAAC
CGCCCGGAAG ATGCGCCGAT TGGCCTGATG CCGATCGATG CGATCTATTC GCCGGTCAAG
AAGGTGTCCT ATGACGTGCA GCCCACCCGT GAGGGGCAGG TGCTGGACTA TGACAAGCTG
ACGCTGAAGC TGGAAACCGA CGGCTCGCTG AGCCCTGACG ATGCCGTGGC CTATGCCGCG
CGGATCATCC AGGACCAGCT GTCGATCTTC GTGAACTTCG ACGAGCCTGA GTCCGCGACG
CGTCAGGACG ACGAAGACGA TCTGGAATTC AACCCGCTTC TCCTGAAGAA GGTTGATGAG
CTGGAGCTGT CCGTGCGGTC GGCCAACTGC CTGAAGAACG ACAATATCGT GTATATTGGC
GATCTGATCC AGAAGACCGA AGCCGAGATG CTGCGCACGC CGAACTTTGG CCGCAAGTCC
TTGAACGAGA TCAAGGAAGT GCTGTCCGGC ATGGGCCTGC ACCTTGGCAT GGATATCGTG
GACTGGCCGC CCGACAACAT CGAAGAGTTG GCCAAGAAGT ACGAAGACAA CTTCTAA
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| Protein sequence | MIHKNWQELI KPTQLVVQPG TDPARKATVV AEPLERGFGL TLGNALRRVL MSSLQGAAIT
SVQIDGVLHE FSSVAGVRED VTDIVLNLKG VAIRMDAEGP KRVSISAKGP RVVTAGDISE
SAGIDVLNKD HVICHLDDGA DLYIELTVNT GKGYVAADKN RPEDAPIGLM PIDAIYSPVK
KVSYDVQPTR EGQVLDYDKL TLKLETDGSL SPDDAVAYAA RIIQDQLSIF VNFDEPESAT
RQDDEDDLEF NPLLLKKVDE LELSVRSANC LKNDNIVYIG DLIQKTEAEM LRTPNFGRKS
LNEIKEVLSG MGLHLGMDIV DWPPDNIEEL AKKYEDNF
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