Gene Jann_0606 details

Gene Information

• Locus tag: Jann_0606
• Symbol: rplF
• ID: 3933048
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Jannaschia sp. CCS1
• Kingdom: Bacteria
• Replicon accession: NC_007802
• Strand: +
• Start bp: 583846
• End bp: 584379
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 637902952
• Product: 50S ribosomal protein L6
• Protein accession: YP_508548
• Protein GI: 89053097
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 23
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCTCGTA TTGGTAAAAG ACCGGTCGAG CTGCCCGGGG GTGTCGAAGC CTCCGTGTCA 
GGTCAGACCG TTGAAGTGAA GGGCCCCAAG GGGACCCGCA GCTTCAAGGC AACCGACGAC 
GTCACCGTGT CTGTGGACGG CAATGTCATC TCTGTTGAGC CGCGCGGTAA GTCCAAGCGC 
GCCCGTCAGC AGTGGGGCAT GTCCCGCACG ATGGTGCAAA ACCTCGTCAC CGGCGTCACC 
GACGGCTTCA AGAAAGAGCT TGAGATCACC GGTGTGGGCT ATCGCGCGCA GATGCAGGGC 
AATGTCCTGA AGCTGTCGCT GGGATATTCC CATGACGTCG ACTTCACCGT GCCTGAGGGC 
GTCACCGTGA CGTGCCCGAA GAACACCGAA GTCATCATCG AGGGCAACGA CCAGCAGCTT 
GTTGGTCAGG TCGCAGCAAA CATTCGCGAG TGGCGCGCGC CGGAGCCCTA TAAGGGCAAG 
GGCATTCGCT ACAAGGGCGA GTATATCTTC CGTAAGGAAG GCAAGAAGAA GTAA 

 

Protein sequence

MSRIGKRPVE LPGGVEASVS GQTVEVKGPK GTRSFKATDD VTVSVDGNVI SVEPRGKSKR 
ARQQWGMSRT MVQNLVTGVT DGFKKELEIT GVGYRAQMQG NVLKLSLGYS HDVDFTVPEG 
VTVTCPKNTE VIIEGNDQQL VGQVAANIRE WRAPEPYKGK GIRYKGEYIF RKEGKKK