Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_0485 |
Symbol | |
ID | 3932926 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | + |
Start bp | 484009 |
End bp | 485709 |
Gene Length | 1701 bp |
Protein Length | 566 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637902830 |
Product | tetratricopeptide TPR_2 |
Protein accession | YP_508427 |
Protein GI | 89052976 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGTGTGA CACGACCAAT TTTTGCCCTT GCCCTGGCGG CGTTGATTTC GCCGCTCACG GCCCCGGGAT CGGCCCAGGC TGACAGTCTG GCAGGGGCGT ATCTTGCGGG CCGCTCGGCC GCGATCACCG GTGATCATGC GCAGGCGGCG ACGTATTTTG ACCGCGCGAT ACAGCTTGAT CCCGGCAACG CCTTTCTGGT GAGCAATTCG GTCTTTGCCC ATGCTTCCCT GGGGGAGTGG GCGGCGGCAG CGGAGGTTGC AGAAGGTCTG CCGGACGGAG CCGAGGGGCA GGAGCTGGTC GCCCTGGTCG ACTTTGTGCG CCACGTTTCG GAAGATCGTT TGCAAGAGGC CATTGATATG ATCGAGGCCG GGGACGGTCC CGGTCCGCTG GCCGATGATC TGGCCCGCGC CTGGCTGACC TTTGGACAGG GCGACATGTC CGGCGCGGTC GACACGTTTG AGGCGCTGGC GTCCGAGCGT GGGCTGGAAG AGCTGGCCGC GCTGCATCTG GCCCTGGCGC GGGCAGCCGT GGGCGATTTT GAGGCCGCGC ATGAGATCCT GTCCGGCGGA ACCGGTGTCC AGATCTCCAA CACCGAACGG GTGGTGCGCG CGCGTGCCGT CGTCATGTTG CAACTGGATA TGCGGGCCGA GGCGCTGGAC CTGCTGGACG GCTATACCCA GGCCGTGCCG GACCCGGGCC TTCTGGCGTT GCAGGCGCGT GTCGGCTCTG GCGAGGATGT GCCGTATGAC TTTGTGAACA CCGCCCAGGA TGGCGTGGCC GAGGTGTTTT TCACCGTGGC GCAACTGCTG GCGGGGGACC GCAACACAAC GTTGCCGCTG CTGATGGCGC AGGCTGCGCG CGGGATCGAC CCGGATCATA CCGACGCCAT GGTCCTGGCC GGAGAGTTCA TGGGCGCGAC CGAGCAATTT CAGCTGGCCG CCGCAACCTA CGGCGAGGTT CCCGAAGACG ATCCGAACTA CATCGAGGCC CAGATGGGCC GAGCCGAAGC GCTGGAATCT CTGGGCCAGG AAGAGGAGGC GATCGGCATT CTGGCGGACC TCGCCGCCGC GCGCCCGGAC CTGGCCTCCG TGCAAGCCGC CTATGGCGAT ATCCTGCGGC GTGATGAGCA GTTTGAGGGG GCGATTGAGG CGTATACGGC GGTCCTTGAC CTCGTGGATG CGGACCAGCC CCGCTATTGG TTCATCCACT ATGCGCGCGC GATCAGCTAC CACCAGACGG ACAATTGGGA TCCGGCAGAG GCTGACTTCC GGCGCGCATT GGAGTTGAAC CCTGAACAAC CCAACGTGTT GAACTATCTG GGCTATTCGC TGGTCGAACA GCGCCGCAAC TTCGATGAGG CCTTGGGCAT GATCCAGCGC GCCGTCGCGG CCCGGCCCGA AAGCGGCTAC ATTATCGACA GCCTCGGATG GGTTTATTAC CGCCTTGGCC GTTTCGAGGA GGCCGTGGCA CCTATGGAAC GTGCGGTTGA GCTTGAGCCC AACGATCCCA TCGTCAACGA TCATCTGGGC GACGTCTATT GGGTCAATGG CCGGTACCGC GAGGCGGAGT TCCAGTGGCA CCGCGCGTTG TCTTTTGATC CCGAGGAGGA GGACGCCGTG CGGATCCGGC GCAAGCTGGA AGTCGGCCTT GACGTTGTGC TGGAGGAAGA AGGCGGCGTG GGCGTTCTGG AAGAAGAGTG A
|
Protein sequence | MRVTRPIFAL ALAALISPLT APGSAQADSL AGAYLAGRSA AITGDHAQAA TYFDRAIQLD PGNAFLVSNS VFAHASLGEW AAAAEVAEGL PDGAEGQELV ALVDFVRHVS EDRLQEAIDM IEAGDGPGPL ADDLARAWLT FGQGDMSGAV DTFEALASER GLEELAALHL ALARAAVGDF EAAHEILSGG TGVQISNTER VVRARAVVML QLDMRAEALD LLDGYTQAVP DPGLLALQAR VGSGEDVPYD FVNTAQDGVA EVFFTVAQLL AGDRNTTLPL LMAQAARGID PDHTDAMVLA GEFMGATEQF QLAAATYGEV PEDDPNYIEA QMGRAEALES LGQEEEAIGI LADLAAARPD LASVQAAYGD ILRRDEQFEG AIEAYTAVLD LVDADQPRYW FIHYARAISY HQTDNWDPAE ADFRRALELN PEQPNVLNYL GYSLVEQRRN FDEALGMIQR AVAARPESGY IIDSLGWVYY RLGRFEEAVA PMERAVELEP NDPIVNDHLG DVYWVNGRYR EAEFQWHRAL SFDPEEEDAV RIRRKLEVGL DVVLEEEGGV GVLEEE
|
| |