| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0466 |
|---|
| Symbol | |
|---|
| ID | 3932907 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 465992 |
|---|
| End bp | 466516 |
|---|
| Gene Length | 525 bp |
|---|
| Protein Length | 174 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637902811 |
|---|
| Product | peptide deformylase |
|---|
| Protein accession | YP_508408 |
|---|
| Protein GI | 89052957 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
|---|
| TIGRFAM ID | [TIGR00079] peptide deformylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCTTC CGATCCTGAT CCATCCCGAC CCGCGCCTGA AGAAGGTCGC CGCGCCCGTG
CCTGATGTCA CGGACGAGTT GCGCGCCTTG GCCGACAATA TGCTCAGCAC GATGTACGAC
GCCCCCGGCA TTGGCCTGGC TGCGCCGCAA GTGGGCGTGG GGCAGCGGTT GATCGTGCTG
GATTGCGAGA AGGGCGATGA TGTCACGCCG CGTCCATTGG CGATGTTCAA CCCAGAGGTC
ATCGCCTCCT CCGACGAGAT GAACACCTAT GATGAAGGGT GCCTGTCGAT CCCCGATATC
TATGCCGACG TGACCCGGCC TGAGGCCGTG ACCGTCCGGT GGATGGATGT GAACGGGGCT
GAGCAGGAAG AGACGTTTGA CGGCCTGTGG GCCACCTGCG TGCAGCACGA GATCGATCAT
CTGGAGGGAA AGCTTTTCAT CGACTACCTC AGCGGGCTGA AGCGGCAGCT GATCACGCGC
AAGATGGTGA AGTTGAAGCG CGACCGAGCG CGCGAAGGCG CGTGA
|
|---|
| Protein sequence | MKLPILIHPD PRLKKVAAPV PDVTDELRAL ADNMLSTMYD APGIGLAAPQ VGVGQRLIVL
DCEKGDDVTP RPLAMFNPEV IASSDEMNTY DEGCLSIPDI YADVTRPEAV TVRWMDVNGA
EQEETFDGLW ATCVQHEIDH LEGKLFIDYL SGLKRQLITR KMVKLKRDRA REGA
|
|---|
| |