| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0433 |
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| Symbol | |
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| ID | 3932874 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 437344 |
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| End bp | 439068 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637902778 |
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| Product | Type I secretion system ATPase, PrtD |
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| Protein accession | YP_508375 |
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| Protein GI | 89052924 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.211617 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTGTGA CTGCAAAAGA TGAGTTGGCC GAATTTCGTC GGCGCAACGC ATGGATCCTT
TGGTCTGTCG CGCTGTTCAG CCTGTTCGTG AACCTTCTGA TGCTGACCGG GCCGCTTTAC
ATGCTTCAGG TGTATGAACG TGTTTTGGGG TCCGGCAGTG AAGAGACGTT GCTGGCGCTG
TCGGTTCTGG TCGCATTTCT TTTCGCCATG ATGGGCATTT TGGACTATGC GCGGGCGCGG
GTCGCGGCAC GGTTTGGCGC CCGGATGCAG GAGGCGTTTG ACGCCCGTGT ATTCCGTGCC
GCGCTGGACC GCGCGCAACG CACCGGTCAG GCGCAGACGG CCTTGGGCGA TCTGGCCTCC
GTTCAGCGGG TCATGTCGTC GCCGGTCTTT ATGGCGGTCT TCGATTTACC ATTCACGCCG
ATCTTCCTGG TGGCGATTTT CTCGTTCCAC GTATGGTTGG GGTGGTTTGC TCTCGGAGCG
GCGGTGACCC TGATCATCGT GACCATCATC AACCGTCTGA CAACCGCGCA ACCCCTTGCG
GAGGCGGCAG AAACCGGGCG CGTCGCCGAC CGCATGGCCG GAGAGATGCA ATCGTCTGCC
GAAGTGATCC GCTCGCTTGG GATGCAGGGG GCCGCCTTTT CGCGATGGCA CCGGCAACGG
GCCCGGGCGC TGGACGTCAG TATGCGGGTG GCGGACCGGG CGGGGGGATA TGCAACCCTG
TCCAAGACCC TGCGATTGTT CCTGCAATCC GCGATTCTGG GCCTCGCGGC GCTGTTGGTC
CTGCGTGGCG AAATCCGGGC CGGAGCGATG ATAGCGGGCT CGATCCTGAT GGGGCGCGCA
TTGGCCCCGA TTGACCTGGC AATTGGCCAG TGGCCGATGA TTCAGGAAGC CCTGCGCGGA
TGGGGCCGTT TGCGCACATT GCTGCTGGAA CAGCGCGAAG AACCGGATCG GCTGACCCTC
CCGCGGCCCA AAGCTGCTTT GGAAGTGGCG GGATTGACCA TCGCCCCACC GGGCGAAAAT
AAGCCGTCCC TGCGCGGTGT GTCGTTTCGG CTGGAGCCGG GTGAGGCCTT GGGCATCATC
GGCCCATCGG GTTCCGGGAA ATCAACGCTG GCCCGCGCGA TCACCGGGGT CTGGCCTGTC
GCGGGCGGCT CGATCCGGCT GGACCGTGCA ACGTTGGATC AATACGACCC CGACGCGCTT
GGCAAATTGA TCGGCTACCT GCCGCAATCC GTCAGCCTGT TTGACGGCAC TGTTGCGGAA
AACATCGCAC GGCTGGATCC CGAACCCTCC GGAGAGGCGG TGACAGCGGC GGCCGTCGCG
GCGGCGGCGG ATTCGATGAT CCGGGAGCTG CCAAATGGTT ACGACACCGA AGTCTCAGGC
CTCGGTACAC GGTTGTCGGG CGGGCAAGTT CAGCGTGTGG GTCTTGCGCG CGCGCTCTAC
GGCAACCCGG TGCTGTTGGT GCTGGATGAG CCGAATTCCG CCCTTGACCA TGAAGGATCG
GAGGCCTTGA ACAAAGCGGT CCAGGGCATG AAAGCGGCGG GCAACAGTGT CCTGATCATG
GCGCATAGAC CCAATGCTAT TCAGGAATGC GATAAGCTGC TGGTCCTGAG CGGTGGCCTC
GTCAAAGCCT TCGGTCCCCG CGATGAGGTG CTGGCCAAGG TTCTGCAAAA CAGTGCTGAG
GTGCAGCGGG TTACAAACGC GAAAGTCTCG GGGGATCTGA CATGA
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| Protein sequence | MRVTAKDELA EFRRRNAWIL WSVALFSLFV NLLMLTGPLY MLQVYERVLG SGSEETLLAL
SVLVAFLFAM MGILDYARAR VAARFGARMQ EAFDARVFRA ALDRAQRTGQ AQTALGDLAS
VQRVMSSPVF MAVFDLPFTP IFLVAIFSFH VWLGWFALGA AVTLIIVTII NRLTTAQPLA
EAAETGRVAD RMAGEMQSSA EVIRSLGMQG AAFSRWHRQR ARALDVSMRV ADRAGGYATL
SKTLRLFLQS AILGLAALLV LRGEIRAGAM IAGSILMGRA LAPIDLAIGQ WPMIQEALRG
WGRLRTLLLE QREEPDRLTL PRPKAALEVA GLTIAPPGEN KPSLRGVSFR LEPGEALGII
GPSGSGKSTL ARAITGVWPV AGGSIRLDRA TLDQYDPDAL GKLIGYLPQS VSLFDGTVAE
NIARLDPEPS GEAVTAAAVA AAADSMIREL PNGYDTEVSG LGTRLSGGQV QRVGLARALY
GNPVLLVLDE PNSALDHEGS EALNKAVQGM KAAGNSVLIM AHRPNAIQEC DKLLVLSGGL
VKAFGPRDEV LAKVLQNSAE VQRVTNAKVS GDLT
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