Gene Jann_0280 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_0280 
Symbol 
ID3932718 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp286144 
End bp287049 
Gene Length906 bp 
Protein Length301 aa 
Translation table11 
GC content60% 
IMG OID637902623 
ProductLysR family transcriptional regulator 
Protein accessionYP_508222 
Protein GI89052771 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.174455 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCGTC TCACAGAAAT GGAAGCCTTC GCCACCGTTG TGGATCAAGG CGGCTTCACC 
GACGCCGCGA AGAAGATGGG GATTTCCAAA TCCGCCGTGT CCAAACACGT CTCTTCGCTG
GAGGCCCGTC TGGGTGCGCG GCTGCTGAAC CGAACCACAC GCCGTGTGTC GCCAACGGAA
ATCGGCCTTG CCTATTATGA CCGCGCCCGC CGCGTCCTGA ACGATGCCGG AGAGGCCGAT
GCCCTCGTCA CCGCCATGCA ATCCGCGCCG TCCGGCACGC TGCGCGTCTC TATCGCCACC
GATTTCGGGG TGAACCACGT CTCTCCCATT CTTGGCGAGT TTCTGCATGC CTTTCCCGAC
ATCACCGTGA ACATGGTCCT CAACAACCGG TATGTGGAGC TGATCTCGGA AGGGTTCGAT
ATGGCGATCC GCGTGGGGGA GCTGGAAGAC AGTTCGCTGA TGGCACGCAA GATCTGCGAG
ACCCAGCGCC GGATGATCGC CGCGCCGTCG TATTTCGAAG AATACGGGCG GCCTGAGCGG
ATCGATGACC TGAATGAGCA CAAGCTGCTG CATTACTCCA ACTCCAGCGC CGGGAACGTC
TGGAAAATCA CTGCCCCCTC GGGTGAGTTG CGCCAAGTGC GCACCGCCGG TTGGCTGACC
GTGAATGATG GTCAAAGCCT TCTGAATGCT GCCATCGGAG GGTTGGGCAT CGCCTATCTT
CCCAGTTTCC TCTATGCCGA ACCGCTTCGT CAGGGCCTAT TGGTCGACGC GATGCCGGAT
CTGCCCACGG ATGTTCAAGG CGTCTATGCC GTCTATCCAC CGGGCCGCTA CATCCAGCCC
AAGGTTCGCT CCTTCATCGA TTACCTGGTC GAAGCCTTCC GCGACAAAGG CCCCGAAGAC
TGGTGA
 
Protein sequence
MDRLTEMEAF ATVVDQGGFT DAAKKMGISK SAVSKHVSSL EARLGARLLN RTTRRVSPTE 
IGLAYYDRAR RVLNDAGEAD ALVTAMQSAP SGTLRVSIAT DFGVNHVSPI LGEFLHAFPD
ITVNMVLNNR YVELISEGFD MAIRVGELED SSLMARKICE TQRRMIAAPS YFEEYGRPER
IDDLNEHKLL HYSNSSAGNV WKITAPSGEL RQVRTAGWLT VNDGQSLLNA AIGGLGIAYL
PSFLYAEPLR QGLLVDAMPD LPTDVQGVYA VYPPGRYIQP KVRSFIDYLV EAFRDKGPED
W