| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0226 |
|---|
| Symbol | |
|---|
| ID | 3932663 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 221303 |
|---|
| End bp | 221785 |
|---|
| Gene Length | 483 bp |
|---|
| Protein Length | 160 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637902568 |
|---|
| Product | OstA-like protein |
|---|
| Protein accession | YP_508168 |
|---|
| Protein GI | 89052717 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1934] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03002] lipopolysaccharide transport periplasmic protein LptA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACCGTA TCCTTGCCCT TTTGGGCGTT ATCCTCTGTC TCACCACACC GCTCTCGGCG
CAGGTCAACA TTGGCTTTGG TGGGGTCGCT TACGATTCCA GTCAGCCGGT GGAGGTCACG
TCTGATGCCC TGACCGTCGA TCAAACGACC GGGGAGGCCG TCTTCACCGG CAATGTCATC
GTCGTTCAAG GGGACCTGCG GATGGCCGCC AGCGCCGTGC GGGTTCTTTA TACCACCGAC
GGCAATCAGG ATATCAGCGA GGTCATCGCC ACAGGTGGCG TTCTTATCAC GCGCGGCACA
GAAGCCGCAG AAGGCAATTC CGCAGTCTTC AACGTCGCGT CGTCGCTGTT GACGTTAAGG
GGCAATGTCC TTGTCACCCA AGGTCAAACC GCCATCGCCG GTGACAACAT GGTGGTGGAC
ATGACCACCG GAAGCGGCAC GGTCGATGGC CGTGTGCGCA CCGTGCTTGG CGGGTCCGAG
TGA
|
|---|
| Protein sequence | MHRILALLGV ILCLTTPLSA QVNIGFGGVA YDSSQPVEVT SDALTVDQTT GEAVFTGNVI
VVQGDLRMAA SAVRVLYTTD GNQDISEVIA TGGVLITRGT EAAEGNSAVF NVASSLLTLR
GNVLVTQGQT AIAGDNMVVD MTTGSGTVDG RVRTVLGGSE
|
|---|
| |