| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0167 |
|---|
| Symbol | |
|---|
| ID | 3932604 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 160154 |
|---|
| End bp | 161335 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637902509 |
|---|
| Product | geranylgeranyl reductase |
|---|
| Protein accession | YP_508109 |
|---|
| Protein GI | 89052658 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0644] Dehydrogenases (flavoproteins) |
|---|
| TIGRFAM ID | [TIGR02023] geranylgeranyl reductase
[TIGR02032] geranylgeranyl reductase family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATACG ACGTTGTTGT TGTGGGCGGC GGGCCGTCTG GCGCCACCGC CGCCGAGGAT
CTCGCACGCT CCGGCCATCT GGTTGCGCTG ATCGACCGCG ACGGGCGGAT CAAACCCTGC
GGCGGTGCGA TCCCGCCGCG TTTGATCGCC GACTTCAACA TTCCCGACAG TCAGATCGTG
GCCAAGATTA CCACCGCCCG GATGATCTCC CCCACCAAAC GGCGTGTGGA TATCCCGATT
GAGAACGGCT TTGTCGGTAT GGTCGACCGG GAGCATTTTG ACGAATTCCT GCGGGTTAGA
GCCTGTGACG CCGGGGCCGA GCGGTTCACC GGCACCTATA CCAGGATCAG TCGCGACGCC
GACGGCACCC ATGTGCATTT CCGTGACAAG GCCAGCGGCG AAGACCGTGT GCTCGACACC
AAGATGGTCA TCGGAGCGGA TGGCGCGCGG TCCAAAGTCG CCGCGTCAGA GGTGAAGGGC
GGCGACAAGA TCCCCTATGT GATCGCCTAC CATGAGATCA TCGAGAGCCC CGATGCCACC
GATGTCTATG ACCCCAAGCG CTGCGACGTC ATCTATGACG GCGCGATCAG TCCCGACTTC
TACGGCTGGG TCTTCCCCCA CGGCAAATCG GCCAGCGTCG GCATGGGCAG CATGATCAAG
GATGTGGACC TGAAAGAGGC GACGGCAGCC CTGCGCGAAG CCTCGGGCCT GACCGACTGC
AAGACCATCC GCAGGGAAGG CGCGCCGATC CCGTTGAAAC CTTTGGATCA ATGGGACAAC
GGACGTGACG TGGTGCTGGC CGGGGATGCG GCGGGCGTTG TCGCCCCGTC ATCCGGCGAA
GGCATATATT ACGCCATGGT TGGTGGGCGC GTGGCCGCCA CGGCTGCGGC CGCCAAGCTG
CAATCGGGCA TGATCAAGGA CCTGCAACTG GCCCGAAAAC TGTTCATGAA AGAGCACAAG
AGCGTCTTCA AAGTCCTCGG CGCGATGCAG AACGCCTACT ACAAATCCGA TGAACGCCGG
GAGCGCTTCG TCAGCCTGTG CCATGACATC GACGTCCAGC GCCTGACATT CGAGGCCTAT
ATGAACAAGT CTCTGGTCAA GGCGCGCCCG ATGGCCCATC TGAAGATCGG GATCAAGAAT
GTGTCCCACC TTCTGGGCCT GGTACAACCG ACACGCGTAT GA
|
|---|
| Protein sequence | MKYDVVVVGG GPSGATAAED LARSGHLVAL IDRDGRIKPC GGAIPPRLIA DFNIPDSQIV
AKITTARMIS PTKRRVDIPI ENGFVGMVDR EHFDEFLRVR ACDAGAERFT GTYTRISRDA
DGTHVHFRDK ASGEDRVLDT KMVIGADGAR SKVAASEVKG GDKIPYVIAY HEIIESPDAT
DVYDPKRCDV IYDGAISPDF YGWVFPHGKS ASVGMGSMIK DVDLKEATAA LREASGLTDC
KTIRREGAPI PLKPLDQWDN GRDVVLAGDA AGVVAPSSGE GIYYAMVGGR VAATAAAAKL
QSGMIKDLQL ARKLFMKEHK SVFKVLGAMQ NAYYKSDERR ERFVSLCHDI DVQRLTFEAY
MNKSLVKARP MAHLKIGIKN VSHLLGLVQP TRV
|
|---|
| |