| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0097 |
|---|
| Symbol | |
|---|
| ID | 3932533 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 91593 |
|---|
| End bp | 92159 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637902438 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_508039 |
|---|
| Protein GI | 89052588 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCGCC CTCGTCTGTT CGACCCCGAT ACTGCCCTTG ATGCGCTGGT TGGCGTTTTC
TGGGCGAAGG GGTATTCGGA CGCGTCCTAT GACGACATCG TCTCTGCCAG CGGGGTGAGC
CGGAAAAGCC TTTATGCGGC GTTCGGTGAT AAGCAGGCGC TTTTTACCAA GGCCCTGCAA
CGCTACCGCA CGGATCACGC GACCCGCTTT TTGGCTGATC TCGACAACGA AGACATCTCC
CTTGACGGGA TCGCGTCGAT GTTCCGGCGT CTGGGTGAGC TGGCGACGTC CGATGCAGGC
AGCATGGGCT GTCTGATGGC AAACACGGCC ACATCTCCCG CGATTAAAAC ACCAGAGGTT
AAAGACCAAC TGGACCGCCA CTTGGAGATA ACGACAAAGC GTTTCAGCAC GGCCCTCGCG
CGGGCGGGCT GTCCGGCAAA ACGGATCAAG GCAAAGGCGC TTTATCTCAC CGGCGCATTG
CAAGGCTTGT TTCTCCTTGC CCATGCACGC GCGCAACCCG ACTTGATTGA GGCCTATGTC
AATGGCGTCG TGGACCAGAT CGCATGA
|
|---|
| Protein sequence | MPRPRLFDPD TALDALVGVF WAKGYSDASY DDIVSASGVS RKSLYAAFGD KQALFTKALQ
RYRTDHATRF LADLDNEDIS LDGIASMFRR LGELATSDAG SMGCLMANTA TSPAIKTPEV
KDQLDRHLEI TTKRFSTALA RAGCPAKRIK AKALYLTGAL QGLFLLAHAR AQPDLIEAYV
NGVVDQIA
|
|---|
| |