Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_0040 |
Symbol | nusA |
ID | 3932476 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | - |
Start bp | 38314 |
End bp | 40086 |
Gene Length | 1773 bp |
Protein Length | 590 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637902381 |
Product | transcription elongation factor NusA |
Protein accession | YP_507982 |
Protein GI | 89052531 |
COG category | [K] Transcription |
COG ID | [COG0195] Transcription elongation factor |
TIGRFAM ID | [TIGR01953] transcription termination factor NusA [TIGR01954] transcription termination factor NusA, C-terminal duplication |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.72674 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCATCA CGTCAGCCAA CCAGCTGGAG CTTTTGCAAA CCGCAGAAGC CGTTGCCCGC GAAAAGATGA TCGACCCCAA TCTGGTGGTC GAGGCGATGG AAGAAAGTCT CGCCCGGGCT GCAAAGTCCC GCTATGGGTC CGAGCTGGAT ATCCGCGTTT CCATCGACCG CAAGACGGGC CGCGCCACGT TCACCCGTGT GCGCACCGTG GCGGATGAAG ACACGCTGGA AAACGACAAG GCCGAAATGC TGCTGGCCGA TGCCGACGCA ACGGTTGCCG CCGAGCGCCC CAATGTCGTG GTCTTCAACG CCAAGTCCCA CGTCTATGAT GAGGAAGGCG AGGTTGTGGA GACCCGCGAC GTGCGCCGTT TTGTCATGCG CAAGCCGACC GAGAATGACA AGCTCCTGAC CGAGGGCGTG GATCAATCCA CCGGCCCCGT GATCGGTGAC ATGATCGCCG ACGAAGTGCC GCCCGTGGAA ATGGGCCGGA TCGCCGCGCA ATCGGCCAAG CAGGTCATTT TGCAGAAGGT CCGCGAAGCC GAGCGTGACC GTCAGTTCGC CGAGTTCAAG GACCGTGTGG GCGAGATCAT CAACGGCGTC GTCAAGCGTG AGGAATACGG CAACGTCATC GTCGACGTAG GCTCCGGTGA GGCGCAGCTG CGCCGCAACG AGAAGATCGG GCGGGAAGCC TATCGCAACG GCGACCGCAT TCGCTGCTAC ATCAAGGATG TGCGCCGTGA GAACCGCGGC CATCAGATCT TCCTGTCGCG CACCGCGCCG GAGTTCATGC GCGAGTTGTT CAAGATGGAA GTGCCCGAGA TCTATGACGG CATCATCGAG ATCAAGGCCG TCGCCCGCGA TCCCGGGTCG CGTGCCAAGA TTGCGGTGAT TTCCTATGAC AATGGCATCG ACCCCGTGGG CGCCTGTGTG GGTATGCGCG GCAGCCGGGT GCAGGCTGTC GTCAACGAAT TGCAGGGCGA AAAGATCGAC ATCATTCCGT GGAATGAGGA TGCGCCGACG TTCCTGGTGA ATGCGCTGCA ACCTGCCGAG GTCTCCAAGG TGGTTCTGGA TGAGGACGCC GGGAAGATCG AAGTCGTGGT GCCCGATGAG CAGCTGAGCC TTGCCATTGG TCGGCGCGGT CAGAACGTGC GTCTTGCCTC ACAGCTGACC AACCTTGATA TCGATATCCT GACCGAGGAA GAGGAATCCA AGCGTCGTCA GGCCGAGTTT GAAGAGCGCA CGAAGCTGTT CATGGATACG CTCGACCTGG ATGAGTTCTT CGCGCAGCTT CTGGTCTCCG AAGGCTTCAC GGCGTTGGAA GAAGTGGCCT ATGTGGAAGC GGACGAGCTT CTGGTCATCG ACGGCGTTGA TGAGGGTACT GCGGAAGAAT TGCAGGCCCG CGCCCGCGAT TATTTGGAGG CGCAGAATAA ACTGGCGCTT GAGAAGGCGA AAGAGATGGG CGTTGAAGAG AGCCTCATTG CATTTGAGGG CCTTACTCCC CAAATGTTGG TGGCCTTGGG CGAAGACGGC GTGAAAACGC TGGAAGACTT CGCTACCTGC GCAGATTGGG AACTGGCCGG CGGTTGGACA ACCGAAGGCG GAGAGCGCAT CAAGGACGAC GGCCTTTTGG AGCCCTTCGA AGTCTCTTTG GAAGAAGCAC AGAACATGGT GATGACCGCA CGCCTGCAAC TGGGTTGGGT GACGATCGAG GAATTGGAAG CCGACGCCGC TGCCGAAGCA GAAGCCGCCG CACAGGAGGG GGCAGAGGGC TAA
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Protein sequence | MAITSANQLE LLQTAEAVAR EKMIDPNLVV EAMEESLARA AKSRYGSELD IRVSIDRKTG RATFTRVRTV ADEDTLENDK AEMLLADADA TVAAERPNVV VFNAKSHVYD EEGEVVETRD VRRFVMRKPT ENDKLLTEGV DQSTGPVIGD MIADEVPPVE MGRIAAQSAK QVILQKVREA ERDRQFAEFK DRVGEIINGV VKREEYGNVI VDVGSGEAQL RRNEKIGREA YRNGDRIRCY IKDVRRENRG HQIFLSRTAP EFMRELFKME VPEIYDGIIE IKAVARDPGS RAKIAVISYD NGIDPVGACV GMRGSRVQAV VNELQGEKID IIPWNEDAPT FLVNALQPAE VSKVVLDEDA GKIEVVVPDE QLSLAIGRRG QNVRLASQLT NLDIDILTEE EESKRRQAEF EERTKLFMDT LDLDEFFAQL LVSEGFTALE EVAYVEADEL LVIDGVDEGT AEELQARARD YLEAQNKLAL EKAKEMGVEE SLIAFEGLTP QMLVALGEDG VKTLEDFATC ADWELAGGWT TEGGERIKDD GLLEPFEVSL EEAQNMVMTA RLQLGWVTIE ELEADAAAEA EAAAQEGAEG
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